BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935147

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42610.1 | Symbols: LSH10 | Protein of unknown function (DUF...   955    0.0  


> AT2G42610.1 | Symbols: LSH10 | Protein of unknown function (DUF640) 
| chr2:17747917-17750440 FORWARD LENGTH=999
Length=999

 Score =  955 bits (517),  Expect = 0.0
 Identities = 555/574 (97%), Gaps = 0/574 (0%)
 Strand=Plus/Plus

Query  3    ACTCAACAAGAGATCATATCATGTCCTCTCCAAGAGAAAGAGGAAAGAATTTGATGGAAT  62
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  69   ACTCAACAAGAGATCATATCATGTCCTCTCCAAGAGAAAGAGGAAAGAGTTTGATGGAAT  128

Query  63   CATCAGGATCAGAACCACCGGTGACACCAAGCCGGTACGAGTCGCAGAAGAGACGCGACT  122
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  129  CATCAGGATCAGAGCCACCGGTGACACCAAGCCGTTACGAGTCGCAGAAGAGACGTGACT  188

Query  123  GGAACACTTTCGGACAGTACTTGAAGAATCAGAGACCGCCCGTGCCCATGTCTCACTGCA  182
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  189  GGAACACTTTCGGACAGTACTTGAAGAATCAGAGACCGCCTGTGCCGATGTCTCACTGCA  248

Query  183  GCTGCAACCACGTGCTTGATTTCCTCAGGTACTTAGACCAGTTCGGTAAGACAAAGGTTC  242
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  249  GCTGTAACCACGTGCTTGATTTCCTCAGGTACTTAGACCAGTTCGGTAAGACAAAGGTGC  308

Query  243  ACGTGCCTGGTTGTATGTTCTACGGCCAGCCTGAGCCACCAGCTCCTTGCACGTGCCCTC  302
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  309  ACGTGCCTGGCTGTATGTTCTACGGCCAGCCTGAGCCACCAGCTCCTTGCACGTGCCCTC  368

Query  303  TCAGACAAGCTTGGGGAAGTCTTGACGCTTTGATCGGACGGCTGAGAGCGGCTTACGAGG  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  TCAGACAAGCTTGGGGAAGTCTTGACGCTTTGATCGGACGGCTGAGAGCGGCTTACGAGG  428

Query  363  AGAACGGTGGATCTCCGGAGACGAATCCTTTCGCTAGTGGAGCGATAAGGGTTTATCTGA  422
            ||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct  429  AGAACGGTGGACCTCCGGAGACTAACCCTTTCGCTAGCGGAGCGATAAGGGTTTATCTGA  488

Query  423  GGGAGGTTAGGGAGTGTCAGGCTAAGGCTAGAGGGATTCCTTACaagaagaagaagaaga  482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  489  GGGAGGTTAGGGAGTGTCAGGCTAAGGCTAGAGGGATTCCTTACAAGAAGAAGAAGAAGA  548

Query  483  agaagCCAACGACGGAGATGGGTGGTGGAAGAGACGActcttcttcttcctcctcttcct  542
            ||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct  549  AGAAGCCAACGCCGGAGATGGGAGGTGGGAGAGAGGACTCTTCTTCCTCCTCCTCTTCCT  608

Query  543  tcagcttctcttaagagattctccatcttcGTGA  576
            ||||||||||||||||||||||||||| ||||||
Sbjct  609  TCAGCTTCTCTTAAGAGATTCTCCATCGTCGTGA  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5