BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935149
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42640.1 | Symbols: | Mitogen activated protein kinase kina... 1443 0.0
AT3G58640.1 | Symbols: | Mitogen activated protein kinase kina... 592 7e-168
> AT2G42640.1 | Symbols: | Mitogen activated protein kinase kinase
kinase-related | chr2:17758532-17764111 REVERSE LENGTH=2600
Length=2600
Score = 1443 bits (781), Expect = 0.0
Identities = 982/1079 (91%), Gaps = 14/1079 (1%)
Strand=Plus/Plus
Query 1178 AATGATGCAGAGAGACTTCTTGAAAGAGCGAGGTGATGATGATTCATCTCCTTGCTCTCC 1237
|||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1526 AATGATGCAGAGTGACCTCTTGAAAGAGCGAGGTGTTGATGATTCATCTCCTTACTCTCC 1585
Query 1238 AGAT-----G-ATGTGTCTAGTTTCCAGCTTGATTCCCATGACCAAGTGTCTGGTGAAAG 1291
|||| | |||| ||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 1586 AGATGAAAAGAATGTCTCTGGTTTCCAGCTTGATTCCCATGACCTAGTGTCTGGTGAATG 1645
Query 1292 GTCAACACTAAATCGGCAGAAGGCAATATCATTTCCATCATCTCCCCGAAGCTATCAAAT 1351
|| ||| || ||| || |||| |||||||||| || |||||||| ||||||||||||||
Sbjct 1646 TTCGACAGTATATCCGCGGAAGTCAATATCATTGCCGTCATCTCCGCGAAGCTATCAAAT 1705
Query 1352 CCAATCATCTGAAAGGAGTGAACCTTCACGTaaaaaaaTAAGCCAAATTTGGAATGAAGT 1411
|||| ||||||||| ||||||| ||||| | || |||||||||| ||||||||||||||
Sbjct 1706 TCAATTATCTGAAAGAAGTGAACATTCACCTCAAGAAATAAGCCACATTTGGAATGAAGT 1765
Query 1412 GCTGGAATCTCCAATGTTCCAGAATAATCCTTTGTTACCATATGAACAATGGAACATAAA 1471
|||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
Sbjct 1766 GCTGGAGTCTCCAATGTTCCAGAATAAACCTTTGTTACCATTTGAAGAATGGAACATAGA 1825
Query 1472 TTTCTCCGATTTGACAGTTGGGGCTTTTGTTGGGAGTGGATCTTCTGGAGTAGTATGTCG 1531
||||||| | |||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1826 TTTCTCCAAGTTGAAAGTTGGGGCTTCTGTTGGGAGTGGAACTTCTGGAGTAGTATGTCG 1885
Query 1532 TGGCATCTGGAATAAAACAGAAGTTGCGATCAAGATGCTTT-TTGGACAACAGCTTACAG 1590
|||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1886 TGGCGTCTGGAATAAAACTGAAGTTGCGATCAAGAT-ATTTCTTGGACAACAGCTTACAG 1944
Query 1591 CTGAGAACATGAAAGATTTCTGCAATGAGATATCTATTCTTAGCCGTCTTCGACATCCCA 1650
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1945 CTGAGAACATGAAAGTTTTCTGCAATGAGATATCTATTCTTAGCCGTCTTCAACATCCCA 2004
Query 1651 ATGTTATTCTGTTCCTTGGAGCATGCACAAAGCCTCCTCAGTTATCAATGATCACAGAGT 1710
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2005 ATGTTATTCTGCTCCTTGGAGCATGCACAAAGCCTCCTCAGTTATCACTGGTCACAGAGT 2064
Query 1711 ATATGAATAGGGGGTCCTTGTATGATATCCTCCGTACCAGAAAAAAGGGGTTAAGCTGGG 1770
|||||| || |||||||||||||||| | |||||||||||||||||| ||| ||||||
Sbjct 2065 ATATGAGTACGGGGTCCTTGTATGATGTGATCCGTACCAGAAAAAAGGAGTTGAGCTGGC 2124
Query 1771 AAAGGAAACTAAAGATTCTAAG-TGACATTTGCAGAGGTTTGATGGGCATTCACCAGATG 1829
||||||||||||||||||| | ||| |||||||| ||||||||| ||| ||| |||||
Sbjct 2125 AAAGGAAACTAAAGATTCT-GGCTGAAATTTGCAGGGGTTTGATGTACATACACAAGATG 2183
Query 1830 GGGATAGTCCACCGTGATCTAAAGAGTGCAAACTGCCTGTTAAACAAGGGGATAGTCAAG 1889
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 2184 GGGATAGTCCACCGTGATCTAACCAGTGCGAACTGCCTGTTAAACAAGTCGATAGTCAAG 2243
Query 1890 ATCTGTGATTTTGGGCTCTCGAGAATGATGA-ATGGCACGACAGTGGAAGATACTGAAGC 1948
||||||||||||||||||||||||| ||||| | || ||| ||||| |||||||||||||
Sbjct 2244 ATCTGTGATTTTGGGCTCTCGAGAAGGATGACA-GGTACGGCAGTGAAAGATACTGAAGC 2302
Query 1949 TGCAGGAACTCCCGAGTGGATGGCTCCTGAACTTATCCGCAATGAACCAGTCACAGAAAA 2008
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2303 TGCAGGAACTCCTGAGTGGATGGCTCCTGAACTTATCCGCAATGAACCCGTCACAGAAAA 2362
Query 2009 ATGTGACATCTTTAGCTTTGGTGTTATAATGTGGGAGCTTTGCACTCTATCCAAGCCCTG 2068
| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2363 AAGCGACATCTTTAGCTTTGGTGTTATAATGTGGGAACTTAGCACTCTATCCAAGCCCTG 2422
Query 2069 GAAAGGAGTCCCAAAAGAAAAAGTCATTCATATCGTTGCAAATGAAGGAGCCCGGCTCAC 2128
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2423 GAAAGGAGTCCCAAAAGAAAAAGTCATTCATATCGTTGCAAACGAAGGAGCCCGGCTCAA 2482
Query 2129 ATTACCCGAAGGACCACTAC-GCCAGCTTATTGCAGATTGTTGGTCGGAACCAGAGCAAA 2187
| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2483 AATACCTGAAGGACCACTACAGA-AGCTTATTGCAGATTGTTGGTCGGAACCAGAGCAAA 2541
Query 2188 GGCCGAGCTGTAAAGAGATAATGCACCGTCTCAAGACCTGCAAGTTTCCGATTTGCTGA 2246
|||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||
Sbjct 2542 GGCCGAGCTGTAAAGAGATACTGCACCGTCTTAAGACCTGCGAGATTCCGATTTGCTGA 2600
Score = 1120 bits (606), Expect = 0.0
Identities = 845/957 (88%), Gaps = 29/957 (3%)
Strand=Plus/Plus
Query 216 GATGATGCTGGACCATCAGAACCAAATCCACCAAGTCCTACCTCGAGGCCTTCACAAGTT 275
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 498 GATGATGCTGGACCATCAGAACCAAATCCACCAAGTCCTACCTTGAGGCCTTCAGAAGTT 557
Query 276 GAGGAGATATCCAAGTCTGTATGTGTGGGAGAAACCTCTAATACTA-AAGAATCACCCAA 334
||| |||||| | | |||||||| || | | || |||| |||| | ||
Sbjct 558 GAGAAGATATACGTGCCTGTATGT-CAGG-G--A--TC----ACTAGCAGAA--A-CCTC 604
Query 335 AAATCTTGTTCAAGATCGGCTGTCAAGTTATGAAGCATCGAATATTCTTTGGAGTACTGG 394
||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 605 TAATCTTGATCAAGATGGGGTGTCAAGTTATGAAGCATCGAATATTTTTTGGAGTACTGG 664
Query 395 GTTCTTTTCTGACCCAATCCCTAGTGGTTTTTACTCTGTGATCCCGGTTGATAGATTGCA 454
|| ||| || ||||| ||||| |||||||||||| |||||||||||||||| |||||| |
Sbjct 665 GTCCTTATCAGACCCGATCCCAAGTGGTTTTTACACTGTGATCCCGGTTGAGAGATTG-A 723
Query 455 -GCTTTTTAAAAGCATTCCTACAATGGAAGTAATTAATGCTCTGGGGAAAGAACGTTTTA 513
|| ||||||||||||||||||| |||||| ||||||||| |||||| |||| ||| |||
Sbjct 724 TGCATTTTAAAAGCATTCCTACATTGGAAGAAATTAATGCGCTGGGGGAAGATCGTCTTA 783
Query 514 AGGCTGATGCGATTTGTGTAGATCTTAAGAACGATATACAGCTTGTTATGATAATGGAGT 573
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 784 AGGCTGATGCGATTTTTGTAGATCTTAAGAACGATATACAGCTTGTTTTGATAAAGGAGT 843
Query 574 TTTTCATCAAATC-TGTCAAAGGAAAGGACTCAAAGGAAGTTATCAAGAAAACTGCTGTA 632
|| |||||||| | ||||| |||| |||||| | ||||||| ||||||| ||||| |
Sbjct 844 TTGTCATCAAA-CTTGTCACAGGATTGGACTCCGATAAAGTTATTAAGAAAATTGCTGGA 902
Query 633 ATGGTGGCAGATGTATATAGAATAAAAACTCCTCTGCAGAGTCCGGCAAGAACAG-TGCG 691
|||||||| || |||||| || ||||| |||||||||||||||||||||| | |||
Sbjct 903 CTGGTGGCAAATATATATAAAAGAAAAA---CTCTGCAGAGTCCGGCAAGAAC-GCTGCA 958
Query 692 ATCA-TTTCAAATTCATGGATTT-CCACTGCTAGGAAAAATCAAACATGGTTCTTGTCGT 749
|| | ||| | |||| || ||| || ||||||||| ||||||| |||||||||||||||
Sbjct 959 AT-ATTTTGACGTTCAAGGGTTTACC-CTGCTAGGACAAATCAAGCATGGTTCTTGTCGT 1016
Query 750 GCTA-GAGCAATCCTCTTTAAAGTTCTAGCTGATGCTGTTGGTCTTGAAAGTAAGCTTGT 808
|| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 GC-ACGAGCAATCCTCTTTAAAGTTCTAGCTGATGCTGTTGGTCTTGACAGTAAGCTTGT 1075
Query 809 AGTGGGTTTCCCTAGTGATCTGAGATCTTCTGCTAGTGTCGACTCATGTAATCATATGTC 868
| |||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||
Sbjct 1076 AATGGGTTTCCCTACTGATCTGAGATTTTCTGCTAGCATCGACTCATATAATCATATCTC 1135
Query 869 TGTTGTGGTTGAGCACAATAATGTGGAAATGCTGGTCGACCTTAAGCGATGTCCTGGTCA 928
|| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1136 TGCTGTGGTTGAGCTCAATAATGTTGAAATGCTAGTCGACCTTAAGCGATGTCCTGGTCA 1195
Query 929 GCTTAAACCCTTCTCACCCAAGGCAGTTTATATGGCTCATATCTCAACGGCATGGCAGAC 988
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1196 GCTTAAACCCTTCTCACCCAAGGCAGTTTATATGGCTCATATCTCAATGGCATGGCAGCC 1255
Query 989 TGATTTTGTAGACAATGACTCTTGTGTTTCACCATTGGAGCCAAACAGTCCCATGGAACG 1048
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 1256 TGATTTTGTAGACAATAACCCTTGTGCTTCACCATTGGAGCCAAACAGTCCCATGGAACG 1315
Query 1049 GTCTTGTCCACCATCTGTATTACAATCCGGTTTAAGTCGTTCACTAAGCGCGCCAAACAT 1108
|||| |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1316 GTCTGGTCCACCATCTGCATTACAATCCGGTTTAAGTCGTTCACTAGGCGAGCCAAACAT 1375
Query 1109 AGCTACTGAAtttttttGGAGAAAGGTCATCAAGGAACAGCCACCTGCTGATTTCAG 1165
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1376 AGCTACTGAAGTTTTGCGGAGAAAGGTCATCAAGGAACCGCCACCTGCTGATTTCAG 1432
Score = 195 bits (105), Expect = 2e-48
Identities = 130/142 (92%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 159 GCTGACCTAGAGGTCCAAGCTACTGACCTTAGGGAGGTGACTGTGGAAGAGACAAGAGAT 218
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 327 GCTGACCTAGAGGTCCAAGCTACTGACCTTAGGGAGATGACTGTGGTAGAGGCAAGAGAT 386
Query 219 GATGCTGGACCATCAGAACCAA-ATCCACCAAGTCCTACCTCGAGGCCTTCACAAGTTGA 277
| |||||||||||||||||||| | || ||||||||||||| |||||||||| |||||||
Sbjct 387 GCTGCTGGACCATCAGAACCAAGA-CCTCCAAGTCCTACCTTGAGGCCTTCAGAAGTTGA 445
Query 278 GGAGATATCCAAGTCTGTATGT 299
||||| |||| || ||||||||
Sbjct 446 GGAGACATCCGAGCCTGTATGT 467
> AT3G58640.1 | Symbols: | Mitogen activated protein kinase kinase
kinase-related | chr3:21686743-21693831 REVERSE LENGTH=3268
Length=3268
Score = 592 bits (320), Expect = 7e-168
Identities = 739/937 (79%), Gaps = 46/937 (5%)
Strand=Plus/Plus
Query 1297 CACTAAATCGGCAGAAGGCAATATCATTTCCATCATCTCCCC-GAAGCTATCAAATCCAA 1355
||||| ||| |||||||||||| ||| | || || ||||||| ||| ||| | || ||||
Sbjct 1903 CACTAGATCCGCAGAAGGCAATCTCACTACCTTCTTCTCCCCAGAA-CTACCGAAGCCAA 1961
Query 1356 TCATCTGAA-AGGAGTGAACCTTCACGTaaaaaaaTAAGCCAAATTTGGAATGAAGTGCT 1414
| | |||| | ||||| | | |||| | || |||||||| || ||| || |||| |
Sbjct 1962 T-A--TGAACA-GAGTGGATCGTCACATCGCAATATAAGCCACATCTGGGATAAAGTATT 2017
Query 1415 GGAATCTCCAATGTTCCAGAATAATCCTTTGTTACCATATGAACAATGGAACATAAATTT 1474
|| |||||| |||||||||||||| || || ||||| |||||| ||||||||||| | ||
Sbjct 2018 GGGATCTCCCATGTTCCAGAATAAGCCATTATTACCTTATGAAGAATGGAACATAGACTT 2077
Query 1475 CTCCGATTTGACAGTTGGGGCTTTTGTTGGGAGTGGA-TCTTCTGGAGTAGTATGT-CGT 1532
||| || |||| |||||| | ||| || | |||| | ||| |||| ||||| | |||
Sbjct 2078 CTCTGAGCTGACTGTTGGGACACGTGTCGGAATTGGATTTTTC-GGAGAAGTAT-TCCGT 2135
Query 1533 GGCATCTGGAATAAAACAGAAGTTGCGATC-AAGATGCTT-TTTGGA-CAACAGCTTACA 1589
|| |||||||| ||||| ||||| ||| ||| || || || || ||| | ||||||
Sbjct 2136 GGGATCTGGAACGGGACAGACGTTGCTATCAAAG-TG-TTCCTT-GAGCAAGACCTTACA 2192
Query 1590 GCTGAGAACATGAAAGATTTCTGCAATGAGATATCTATTCTTAGCCGTCTTCGACATCCC 1649
|||||||||||| | |||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 2193 GCTGAGAACATGGAGGATTTCTGCAATGAGATATCAATTCTTAGCCGACTTAGACATCCC 2252
Query 1650 AATGTTATTCTGTTCCTTGGAGCATGCACAAAGCCTCCTC-AGTTATCAATGATCACAGA 1708
|||||||| ||||||||||||||||||||||||||||| | | |||||| ||||||| ||
Sbjct 2253 AATGTTATACTGTTCCTTGGAGCATGCACAAAGCCTCCACGA-TTATCACTGATCACTGA 2311
Query 1709 GTATATG-AATAGGGGGTCCTTGTATGA-TATCCTCCG-T--ACCAGA-AAAAAG-G-GG 1760
||| ||| || | ||| || |||||| | | | |||| | | || ||||| | ||
Sbjct 2312 GTACATGGAA-ATGGGATCTTTGTATTACT-TGCTCCACTTGAGTGGACAAAAAAAGAGG 2369
Query 1761 TTAAGCTGG-GAAAGGAAACTAAAGATTCTAAGTGACATTTGCAGAGGTTTGATGGGCAT 1819
||||||||| | | |||| |||||||| || | ||||||||||| || |||||| | ||
Sbjct 2370 TTAAGCTGGCGGA-GGAAGCTAAAGATGCTGCGGGACATTTGCAGGGGATTGATGTGTAT 2428
Query 1820 TCACCAGATGGGGATAGTCCACCGTGATCTAAAGAGTGCAAACTGCCTGTT-A--AACAA 1876
|||| |||||||||||| ||||||||| |||||||||||||||| || || | |||||
Sbjct 2429 ACACCGGATGGGGATAGTACACCGTGATATAAAGAGTGCAAACTGTCTTTTGAGCAACAA 2488
Query 1877 GGGGATAGTCAAGATCTGTGATTTTGGGCTCTCGAGAATGATGA-ATGGCACGACAGTG- 1934
||| |||||||||||||||||||||||| |||||||| |||| | || || ||| ||
Sbjct 2489 ATGGACAGTCAAGATCTGTGATTTTGGGCTGTCGAGAATAATGACAGGG-ACAACAATGA 2547
Query 1935 GAAGATACTGAAGCTGCAGGAACTCCCGAGTGGATGGCTCCTGAACTTATCCGCAATGAA 1994
|| || || | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2548 GA-GACACAGTCTCTGCAGGAACTCCAGAGTGGATGGCTCCTGAACTTATCCGCAATGAG 2606
Query 1995 CCAGTCACAGAAAAATGTGACATCTTTAGCTTT-GGTGTTATAATGTGGGAGCTTTGCAC 2053
|| || ||||||| ||||| ||||| || ||| ||||| |||||||||||||| |||||
Sbjct 2607 CCCTTCTCAGAAAAGTGTGATATCTTCAG-TTTAGGTGTAATAATGTGGGAGCTATGCAC 2665
Query 2054 TCTATCCAAGCCCT-GGAAAGGAGTCCCAAAAGAAAAAGTCATTCATA-TCGTTGCAAAT 2111
| || ||| | ||| || ||||||| || ||| || || || | |||| |
Sbjct 2666 TTTAACCA-GACCTTGGGAAGGAGTACCGCCTGAACGGGTTGTTTATGCTA-TTGCTTAC 2723
Query 2112 GAAGGAGCCCGGCTC-ACATTACCCGAAGGACCACTACGCCAGCTTATTGCAGATTGTTG 2170
|| ||||| ||||| | ||| || ||||||||||| | |||||||||||||||||||
Sbjct 2724 GAGGGAGCTCGGCTTGAGATT-CCTGAAGGACCACTGGGAAAGCTTATTGCAGATTGTTG 2782
Query 2171 GTCGGAACCAGAGCAAAGGCCGAGCTGTAAAGAGATA 2207
| | ||||| || ||||| ||||| || || ||||||
Sbjct 2783 GACAGAACCGGAACAAAGACCGAGTTGCAATGAGATA 2819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112449220800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5