BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935150
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42650.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1670 0.0
> AT2G42650.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr2:17765480-17766888 FORWARD LENGTH=1409
Length=1409
Score = 1670 bits (904), Expect = 0.0
Identities = 1070/1151 (93%), Gaps = 8/1151 (1%)
Strand=Plus/Plus
Query 12 CCATCACTAATGTCAAGAGTAAGTCCCAAGACCGTGGACGATGCAGTTAAGGCTCTGGTC 71
||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 42 CCACCACTTATGTCAAGAGTAAGTCCCAAGACTGTGGACGATGCAGTTAAGGCTCTGGTC 101
Query 72 AAAGAGGGAAACAAAAAATCAAAGACGGAGAAGCCACACCTTCTAGAGGAAGATGAATTC 131
|||||||||||| ||||||||| ||||||||||||||| |||||||| ||||| | ||||
Sbjct 102 AAAGAGGGAAACGAAAAATCAAGGACGGAGAAGCCACAGCTTCTAGAAGAAGACGGATTC 161
Query 132 TTTTACCTAGTCGTAGCCCTAAAGAAGATTCCACAGAGGAATTTTACTAACGCTTATCGT 191
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 162 TTTTACCTAGTCGTAGCCCTAAAGAAGATTCCACAGAGGAATTTTACGAACGCTTATCGT 221
Query 192 ATTCCTCTCCCGCATCCGCTTATTAGCACTACGGAAGACTCACCGGAGCTCTGTCTTATC 251
|||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||
Sbjct 222 ATTCCTCTCCCGCATCCGCTAATTAACACTACCGAAGACTCACCGGAGCTCTGTCTCATC 281
Query 252 ATCGACGATAGATCGGAAAGTGGTCTCACCAAGGAAGATGCGATGAAGAAGATCAAATCA 311
|||||||| ||| | ||||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 282 ATCGACGACAGACCTGAAAGTGGTCTCACCGAGGAAGATGCGAAGAAGAATATCAAATCA 341
Query 312 GAGAACATACCAATCACTAAAGTTGTTAAGGTTTCGGAGCTGAAATCGGATTATGGATCA 371
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 342 GAGAACATACCAATCACGAAAGTTGTTAAGCTTTCGAAGCTGAAATCGGATTATGGATCA 401
Query 372 TTCGAATCGAAACGGAAGCTTTGTGATTCATACGATATGTTTTTCTCTGATCGGAGAGTG 431
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 402 TTCGAATCGAAACGGAAGCTTTGTGATTCATACGATATGTTTTTCTCAGATCGGAGAGTG 461
Query 432 ATTCCTCTGTTACCGAGATTGATTGGGAAGAAtttttttCTA-AGGAAGAAGATTCCTGT 490
|||||| |||| || | ||||||||||||||| || |||| | || ||||||| ||||||
Sbjct 462 ATTCCTATGTTGCCAAAATTGATTGGGAAGAAGTTCTTTC-AGAGCAAGAAGACTCCTGT 520
Query 491 GGCGATTGATTTGAAGCATAGGAATTGGAAAGAGCAGATTGAGAAAGCTTGTGGTGCTGC 550
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 521 GGCTATTGATTTGAAGCATATGAATTGGAAAGAGCAGATTGAGAAAGCTTGTGGTGCTGC 580
Query 551 TATGTTCTTCATGAGGACTGGGACTTGTAGTGTGATCAAAGTTGCGAAATTGTCCATGGA 610
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 581 TATGTTCTTCATGAGGACTGGGTCTTGTAGTGCGATCAAAGTTGCGAAATTGTCCATGGA 640
Query 611 AAGCGATGAAATCGCTGAGAATGTGATGGCGACTTTGAATGGAGTTGTTGATGTTTTGCC 670
||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 641 AAGCGATGATATCGTTGAGAATGTGACGGCGACTTTGAATGGTGTTGTTGATGTTTTGCC 700
Query 671 TAGTAAGTGGAAATACATAAGATCTTTGCATTTGAAGTTATCTGAGAGTTTAGCTTTGCC 730
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 701 TAGTAGGTGGAAATACATAAGATCTTTGCATTTGAAGTTATCTGAGAGTTTATCTTTGCC 760
Query 731 -TCTATATCAGACAGTTCCATATTTGAAGCTCAAGATCGATCCTTCT-GGTGTTGAAGAA 788
| ||||||||||||| || |||||| |||||||||| ||||||| | ||||||||||||
Sbjct 761 AT-TATATCAGACAGTGCCTTATTTGCAGCTCAAGATTGATCCTT-TAGGTGTTGAAGAA 818
Query 789 GTTAGGAATGGTGAAGAATTAGTTAAAAGTGATGATGTTGAT-GATAGTAGTAAGAGTGT 847
|||| ||||||||||| ||||| ||||||||||| || |||| | |||||||||||||||
Sbjct 819 GTTAAGAATGGTGAAGGATTAGCTAAAAGTGATGTTGATGATAG-TAGTAGTAAGAGTGT 877
Query 848 GAAGACAAAGAAGAAGAAAGGAAGGATTCATGAAGTTAGATATATGGATAGTAATGTATC 907
|||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 878 GAAGACAAAGAAGAAGAATGGAAAGATTCATGAGGTTAGATATATGGATAGTAATGTATC 937
Query 908 TGAGACTCTTGGTGAAGATAAAATCGAAAAGAATGTTGAACAAGATGAGGTTACTGGTGA 967
||||||||||||||| ||| || |||| | || ||||| | ||||||||||| ||| |||
Sbjct 938 TGAGACTCTTGGTGATGATGAATTCGATAGGAGTGTTGGAGAAGATGAGGTTGCTGATGA 997
Query 968 TCTCAAAGGTTCAGGGGATAAGAAGAAGAGGAAGAAGATGAGTAGTAGTAAGTCTGCAGT 1027
|||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TCTCAATGCTTCTGGAGATAAGAAGAAGAGGAAGAAGATGAGTAGTAGTAAGTCTGCAGT 1057
Query 1028 GAGTGAGAAACCAGACATTGTGAAGAGTAAGAATGGGCAAAAGTCGAAAAAGCTAAAGAA 1087
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 GAGTGGGAAACCAGACATTGTGAAGAGTAAGAATGGGCAAAAGTCGAAAAAGCTAAAGAA 1117
Query 1088 TGACATTGATGGGTCTGGTGGTGGATTGAAAGCAAAGACTAAGAGGAGGTGAACCAAGAA 1147
|||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1118 GGACATTGATGAGTCTGGTGGTGGATTCAAAGCTAAGACTAAGAGGAGGTGAACCAAGAA 1177
Query 1148 AAGAAGATTTT 1158
|||||||||||
Sbjct 1178 AAGAAGATTTT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5