BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935152
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42670.2 | Symbols: | Protein of unknown function (DUF1637)... 1212 0.0
AT3G58670.1 | Symbols: | Protein of unknown function (DUF1637)... 547 5e-155
> AT2G42670.2 | Symbols: | Protein of unknown function (DUF1637)
| chr2:17771776-17774647 REVERSE LENGTH=1434
Length=1434
Score = 1212 bits (656), Expect = 0.0
Identities = 726/760 (96%), Gaps = 4/760 (1%)
Strand=Plus/Plus
Query 1 TTTTGGAATTGGATTCAGATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TTTT-GAATTGGATTCAGATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAG 516
Query 61 GCGTCTTTCTCTTCAGACGCACCAATATCAGACGAGGCTCTGGAGAAGGTTCGCAATGTC 120
||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||
Sbjct 517 GCGTCTTTCTCTTCAGACGGACCAATAACAGAAGATGCTCTGGAGAAGGTTCGCAATGTC 576
Query 121 TTGGAGAAAATCAAGCCATCTGATGTTGGAATCGAACAGGAAGCTCAATTGGCTCGGACC 180
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||
Sbjct 577 TTGGAGAAAATCAAGCCATCTGATGTTGGAATTGAGCAGGATGCTCAATTGGCACGGTCC 636
Query 181 AGGTCTGGTCCTCTCAATGAACGCAATGGAAGTCATCAGTCTCCCCCAGCAATAAAGTAT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 637 AGGTCTGGTCCTCTCAATGAACGCAATGGAAGTAATCAGTCTCCCCCAGCAATAAAGTAT 696
Query 241 CTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATTTTCTGTATGCCACCTTCCTCT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 697 CTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATCTTCTGTATGCCACCTTCTTCT 756
Query 301 ATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCATTTATGGTTCA 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 757 ATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCGTTTATGGTTCA 816
Query 361 ATGCACGTGAAGTCATATGATTGGCTAGAGCCTGAACTGACCGAACCAGATGATCCATCA 420
||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 817 ATGCATGTGAAGTCATATGATTGGCTAGAGCCTCAACTGACCGAACCAGAGGATCCATCA 876
Query 421 C---AAGCAAGACCCGCTAAACTGGTGAAGGATACTGAGATGACGGCTCCAAGCCCAGCA 477
| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 877 CAAGAAGCAAGACCTGCTAAACTGGTGAAGGATACTGAGATGACGGCTCAAAGCCCAGTA 936
Query 478 ACAACATTATATCCGAAAAGTGGTGGCAACATTCATTGTTTCAAAGCCATCACCCATTGT 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 937 ACAACATTATATCCGAAAAGTGGTGGCAACATTCACTGTTTCAAAGCCATCACCCATTGT 996
Query 538 GCTGTTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTAC 597
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GCTATTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTAC 1056
Query 598 TTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAAGTAGAAGTGAATGGGGAAGTGGTC 657
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 1057 TTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAATTAGAAGTGGATGGAGAAGTGGTC 1116
Query 658 ACAGACGTGACTTGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAGTT 717
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1117 ACAGACGTGACATGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAATT 1176
Query 718 CCTTACAGAGGTCCTGTTATTAGAACTTGACGATAATCTA 757
|| |||||||||||||| |||||||||||| ||| |||||
Sbjct 1177 CCGTACAGAGGTCCTGTCATTAGAACTTGATGATGATCTA 1216
> AT3G58670.1 | Symbols: | Protein of unknown function (DUF1637)
| chr3:21703390-21706079 REVERSE LENGTH=1271
Length=1271
Score = 547 bits (296), Expect = 5e-155
Identities = 598/741 (81%), Gaps = 31/741 (4%)
Strand=Plus/Plus
Query 19 ATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAGGCGTCTTTCTCTTC-AGA 77
|||||||| || ||| ||||||||||| ||||||||||||| | ||| |||| | | |
Sbjct 237 ATCATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTA-A 295
Query 78 CGCACCAATATCAGACGAGG-CTCTGGAGAAGGTTCGCAATGTCTTGGAGAAAATCAAGC 136
| || | || || |||| || | || |||||||||||||||||||||||||||||||
Sbjct 296 TGGTCCTGTGTCTGAGGAGGCCT-TAGACAAGGTTCGCAATGTCTTGGAGAAAATCAAGC 354
Query 137 CATCTGATGTTGGAATCGAACAGGAAGCTCAATTGGCT-CGGACCAGGTCTGGTCCTCTC 195
| ||||||||||| ||||||||||||||||||||| | || | || ||||||||
Sbjct 355 CGTCTGATGTTGGTCTCGAACAGGAAGCTCAATTGG-TGCGTAATTGGCCTGGTCCTGGG 413
Query 196 AATGAACGCAATGGAAGTCATCAGTCTCCCCCAGCAATAAAGTATCTTCATTTGCATGAG 255
|| || || ||||||| ||||| |||| ||||||||||| || ||||| || ||||||
Sbjct 414 AACGAGCGTAATGGAAACCATCATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAG 473
Query 256 TGTGACAGTTTCTCTATAGGAATTTTCTGTATGCCACCTTCCTCTATGATACCTCTTCAT 315
|||||||| ||||| || ||||||||||| ||||||||| ||||| ||||| ||||||
Sbjct 474 TGTGACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCAT 533
Query 316 AACCATCCGGGCATGACCGTGCTAAGCAAGCTCATTTATGGTTCAATGCACGTGAAGTCA 375
|| ||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 534 AATCATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCAATGCACGTTAAGTCA 593
Query 376 TATGATTGG-CTAGAGCCTGAACTGACC-GAACCAGATGATCCATCACAAGCAAGACCCG 433
||||||||| || |||||||| | | | || | ||| ||||||| ||||||||||||||
Sbjct 594 TATGATTGGGCT-GAGCCTGACCA-ATCAGAGCTAGACGATCCATTACAAGCAAGACCCG 651
Query 434 CTAAACTGGTGAAGGATACTGAGATGACGGCTCCAAGCCCAGCAACAACAT-TATATCCG 492
| || ||||| ||||||| ||| ||||| | || ||||||||||| || | |||||||
Sbjct 652 CGAAGCTGGTCAAGGATATTGATATGACTTCCCCTAGCCCAGCAACCAC-TCTATATCC- 709
Query 493 AA-AAGTGGTGGCAACATTCATTGTTTCAAAGCCATCACCCATTGTGCTGTTCTT-GACA 550
|| || ||||||||||||||||||||||||||||| || |||||||| | ||| ||||
Sbjct 710 AACAACCGGTGGCAACATTCATTGTTTCAAAGCCATTACTCATTGTGCAAT-CTTCGACA 768
Query 551 TCTTAGCTCCACCTTACTCTTC-AGAGCATGATCGG-CATTGCA-CTTACTTCCGGAAAT 607
||||| |||| || |||||||| | |||| | | || |||| || ||||||| ||||
Sbjct 769 TCTTATCTCCTCCATACTCTTCTACT-CATGG-CAGACACTGCAACT-ACTTCCGAAAAT 825
Query 608 CCAGAA-GAGAAGACTTACCAGGTGA-AGTAGAAGTGA--A-TGGGGAAGTGGTCACAGA 662
|| || | | |||||||| ||||| | | ||||||| | ||| |||||| || || |
Sbjct 826 CCCCAATGCTA-GACTTACCTGGTGAGATT-GAAGTGATGAATGGAGAAGTGATCTCAAA 883
Query 663 CGTGACTTGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACG-ACGAGTTCCTT 721
||||| |||||||| || | |||||| || ||| ||||||||||| | | ||||||| |
Sbjct 884 TGTGACATGGCTTGAAGAGTATCAACCTCCAGATAACTTTGTGATATGGA-GAGTTCCGT 942
Query 722 ACAGAGGTCCTGTTATTAGAA 742
|||||||||| || |||||||
Sbjct 943 ACAGAGGTCCAGTGATTAGAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5