BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935153

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42680.1 | Symbols: MBF1A, ATMBF1A | multiprotein bridging f...   717    0.0  


> AT2G42680.1 | Symbols: MBF1A, ATMBF1A | multiprotein bridging 
factor 1A | chr2:17774903-17776320 FORWARD LENGTH=702
Length=702

 Score =  717 bits (388),  Expect = 0.0
 Identities = 434/456 (95%), Gaps = 4/456 (1%)
 Strand=Plus/Plus

Query  22   AAACCATGGCAGGAGTTGGACCGATGACTCAAGATTGGGAGCCGGTGGTGATCCGTAAGA  81
            |||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  65   AAACCATGGCCGGAATTGGACCGATAACTCAGGATTGGGAGCCGGTGGTGATCCGTAAGA  124

Query  82   AAGCCC-CTAACGCCGCCGCCAAGCGTGACGACAAAACTGTCAACGCCGCTCGCCGAGCC  140
            || ||| |||||||||| |||||||| ||||| |||||||||||||||||||| ||| ||
Sbjct  125  AA-CCCGCTAACGCCGCTGCCAAGCGCGACGAGAAAACTGTCAACGCCGCTCGTCGATCC  183

Query  141  GGCGCCGATATCGAGACCGTCAGAAAATTCAATGCTGGAACCAACAAGGCCGCATCAAGC  200
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  184  GGCGCCGATATCGAGACCGTCAGAAAATTCAATGCTGGAACCAACAAGGCGGCATCAAGC  243

Query  201  GGCACATCTCTGAACACCAAAAGGCTTGACGATGACACTGAGAACCTTACTCATGAACGT  260
            ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct  244  GGCACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCATGAACGT  303

Query  261  GTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCCGAACAGACAAGAAGCTAACCCAG  320
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  304  GTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAGACAAGAAGCTAACCCAG  363

Query  321  TCCCAGCTTGCTCAAATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGC  380
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  TCCCAACTTGCTCAAATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGC  423

Query  381  AAAGCAAT-CCCGAACCAGCAAATCCTTTCTAAGCTGGAGAGAGCACTTGGAGCTAAGCT  439
            ||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  424  AAAGCTATACCC-AACCAGCAAATCCTTTCTAAGCTGGAGAGAGCGCTTGGAGCTAAGCT  482

Query  440  TCGTGGAAAGAAGTGAGCCAAGTTCTACTGATGTAG  475
            ||||||||||||||||||||||||||||||||||||
Sbjct  483  TCGTGGAAAGAAGTGAGCCAAGTTCTACTGATGTAG  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5