BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935163
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42750.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1766 0.0
> AT2G42750.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:17793307-17795680 FORWARD LENGTH=1393
Length=1393
Score = 1766 bits (956), Expect = 0.0
Identities = 1037/1077 (96%), Gaps = 2/1077 (0%)
Strand=Plus/Plus
Query 1 GGATCTTGTG-AGCTTCTTCAATGGCGCAGATACTTTCTCCTGTTTGTACGGATCTTTTG 59
||||||| || || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 78 GGATCTTTTGAAG-TTCTTCAATGGCGCAGATACTTTCCCCTGTTTGTACGGATCTTTTG 136
Query 60 AAGTTCCAGAACTCAGTTCTTAGCTCCAGATCAGGTACTTCGCCGCGTTTCTCGGCGAAG 119
|||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 137 AAGTTCCAGAACTCAGCTCTTAGCTCCAGATCAGGTGCGTCGCCGCGGTTCTCGGCGAAG 196
Query 120 ACAAGCGGTGCTTCTTCATCTTGGGGCTTACCTCGGTACGCCGGAAAGAGGCGAAGTGGT 179
|| | ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |
Sbjct 197 ACCACCGGTGCTTCTTCATCTTGGTACTTACCTCGGTACGCAGGAAAGAGGCGAACCGAT 256
Query 180 TCCATCGGAAGATTGAGAGTTGCAACTGAGGATGCTTCTTCTCTTTCTACCGGTGATGTC 239
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 257 TCAATCGGAAGATTGAGAGTTGCAACTGAGGATGCTTCTTCTCTTTCCACCGGTGATGTC 316
Query 240 GCCGATGATTACTATGCCGTTCTCGGACTCCTTCCAGATGCCACACAGGAGGAGATTAAG 299
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 317 GCCGATGATTACTATGCCGTTCTCGGACTCCTTCCAGATGCTACGCAGGAGGAGATTAAG 376
Query 300 AAAGCTTACTATAACTGTATGAAATCTTGCCATCCAGACTTGAGTGGCAATGACCCAGAA 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 377 AAAGCTTACTATAACTGTATGAAATCGTGCCATCCAGACTTGAGTGGCAATGACCCCGAA 436
Query 360 ACTACAAATTTCTGCATGTTTATTAACGATATCTATGAGATTCTCAGTGACCCTGTACAG 419
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 437 ACCACAAATTTCTGCATGTTCATTAACGATATCTATGAGATTCTCAGTGACCCTGTACAG 496
Query 420 CGTATGGTTTACGATGAGATTCATGGGTATACAGTGACTGCCATCAATCCTTTTCTTGAC 479
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CGTATGGTTTACGATGAAATTCATGGGTATACAGTGACTGCCATCAATCCTTTTCTTGAT 556
Query 480 GACTCCACCCCAAGGGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAAAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GACTCCACCCCAAGGGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAAAT 616
Query 540 TGTGCCAATGTGGCTCCAGATATATTTAAAATTGAGGAAGACTTTGGAAGAGCAAGGGCC 599
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 617 TGTGCCAATGTGGCTCCAGATATATTTCAAATTGAGGAAGACTTTGGTAGAGCAAGGGCT 676
Query 600 TGTAATCAGCGTGGCAACCCAGATTTAGTTCAGCAAGCAGTTGAAACATGCCCGGTTGAT 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 677 TGTAATCAGCGTGGCAACCCAGATTTGGTTCAGCAAGCAGTTGAAACATGCCCGGTTGAT 736
Query 660 TGTATCCATCAGACTTCTGCTGCACAGTTGTCATTGCTTGAAGATGAAATGCGAAGGGTC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGTATCCATCAGACTTCTGCTGCACAGTTGTCATTGCTTGAAGATGAAATGCGAAGGGTT 796
Query 720 GAAAGAGTGAATGTTGCTCTGATGCTTTCTGGAATGGGATCAGGAGCAGTTGATGTTTTC 779
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 797 GAAAGAGTGAATGTTGCTCTGATGCTTTCTGGAATGGGGTCAGGAGCAGTTGATGTTTTC 856
Query 780 AGAATGGCGAGATCTCGATGGGAAAAGAGGCAAGCAAAAGTTTTGAATCAAGCTAGAAGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 AGAATGGCGAGATCTCGATGGGAAAAGAGGCAAGCAAAAGTTTTGAATCAAGCTAGAAGT 916
Query 840 AGAATGATGAAGAGGAAAAACACAGACGAAACACCTTCCTATTGGGATAACCTCTGGGGC 899
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 917 AGAATGATGAAGAGGAAAAACACAGATGAAACACCTTCCTATTGGGATAACCTCTGGGGC 976
Query 900 AAACAGAATGATTACCAGAAAAGCGAGGAAGAAGTACAAGAACGAGTACAGCGAGCAGCA 959
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 977 AAACAGAATGAATACCAGAAAAGCGAGGAAGAAGTACAAGAACGAGCACAGCGAGCCGCC 1036
Query 960 GCAGCAGCCAGGAGATGGAGGGAATACTCACGAAGAGGCGTGGATAAGCGTCCCACCTTC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1037 GCAGCAGCCAGGAGATGGAGGGAATACTCACGAAGAGGCGTGGATAAGCGCCCCACCTTC 1096
Query 1020 AAACTCCCAGACTCCGCCTCCAGAGGAGACAATTGAAACCATAGACATAAATCACTT 1076
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1097 AAACTCCCAGACTCCGCCTCCAGAGGAGACAACTGAAACCATAGACAGAAATCACTT 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5