BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935169
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42800.1 | Symbols: AtRLP29, RLP29 | receptor like protein 2... 2102 0.0
> AT2G42800.1 | Symbols: AtRLP29, RLP29 | receptor like protein
29 | chr2:17807942-17809590 REVERSE LENGTH=1649
Length=1649
Score = 2102 bits (1138), Expect = 0.0
Identities = 1352/1452 (93%), Gaps = 27/1452 (2%)
Strand=Plus/Plus
Query 1 CTCTCTCTTACAGCAAATTCTATGACGATGAAGAGAGCTTTACCATCTCCTTCCTCACTG 60
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 25 CTCTCTCTTACACCAAAACCTATGACGATGAAGAGAGCTTTACCATCTCCTTCCTCACTG 84
Query 61 --C-TCTTCTTTCTCCTGATAACACCACTCTTTCTCTGTCAAGAAAACAGAGTCTCTGCC 117
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 85 CTCTTCTTCTTTCTCCTGATAACACCACTCTTCCTCTGCCAAGAAAACAGAGTCTCTGCC 144
Query 118 TCAATGCCTCCATCTGAGTCAGAAACTCTCTTCAAGATCATGGAATCAATGTCTTCTGAT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TCAATGCCTCCATCTGAGTCAGAAACTCTCTTCAAGATCATGGAATCAATGTCTTCTGAT 204
Query 178 CAACAATGGCGTCAATCCCACCCAAACCCTTGTGCACCTGGCTCATCTTGGCCAGGCATT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CAACAATGGCGTCAATCCCACCCAAACCCTTGTGCACCTGGCTCATCTTGGCCAGGCATT 264
Query 238 GAGTGCAAAACCGGTCCAGACCACTTATCTCACGTCTCTCGACTCGATTTTGGCTCTGCT 297
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 265 GAGTGCAAAACCGGTCCAGACCACTTATCACACGTCTCTCGACTCGATTTCGGCTCTGCT 324
Query 298 CCAAACCCTTCATGTAAATCCtctgcttctttcccttcttcaatcttttctctgcctttt 357
|||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 325 CCAAACCCCTCTTGTAAATCCTCTGCTTCTTTCCCTTCTTCAATCTTCACTCTCCCTTTT 384
Query 358 ctccaatcagtcttcttcttcaactgcttcaCTCACTTCCCAACCACAATCATCTTCCCC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 CTCCAATCAGTCTTCTTCTTCAACTGCTTCACTCACTTCCCAACCACAATCATGTTCCCT 444
Query 418 ATTAAGCTCCTCCCAAATTCTTCTCTTCAACAGCTTAGCCTCAGATCAAACCCTTCTCTC 477
|| || ||| |||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 445 ATAAAACTCATCCCTAACTCTTCTCTTCAACAACTTAGCCTCAGATCAAACCCTTCTCTC 504
Query 478 TCAGGTCAAATCCCTCCTCGCATTTCTTCTCTCAAATCATTACAGATACTCACTCTCTCA 537
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 505 TCAGGTCAAATCCCTCCTCGCATTTCTTCTCTCAAATCTTTACAAATCCTCACTCTCTCA 564
Query 538 CAAAACCGGTTAACCGGAGATATCCCTCCGGCGATTTTCTCACTGAAAAGCCTCGTACAC 597
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 565 CAAAACCGATTAACCGGAGATATCCCTCCGGCGATTTTCTCATTGAAAAGCCTCGTACAC 624
Query 598 CTCGATCTCAGCTACAACAAGCTCACAGGTAAAATCCCTGTGCAACTGGGGAATCTCAAT 657
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||
Sbjct 625 CTCGATCTCAGCTACAACAAGCTCACAGGTAAAATCCCTCTGCAATTAGGGAATCTAAAT 684
Query 658 AACCTCGTTGGCTTAGATTTAAGCTACAATTCGTTAACCGGTACAATCCCTCCAACGATC 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 685 AACCTCGTTGGCTTAGATTTAAGCTACAATTCTTTAACCGGTACAATCCCTCCAACGATC 744
Query 718 TCGCAACTGGGTATGCTTCAGAAACTCGACCTCAGCTCAAATTCTCTCTTAGGAAGAATC 777
|| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 745 TCTCAACTGGGTATGCTTCAGAAACTCGACTTGAGCTCAAATTCTCTCTTCGGAAGAATC 804
Query 778 CCAGAAGGTGTTGAAAAGCTTCGTTCTTTATCTTTCATGGCGTTAAGCAACAACAAACTA 837
|| |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 805 CCGGAAGGTGTAGAAAAGCTTCGTTCGTTGTCTTTCATGGCGTTGAGCAACAACAAACTA 864
Query 838 AAAGGAGCTTTTCCAAAAGGAATCTCGAAACTTCAGAGTTTGCAGTACTTCATAATGGAT 897
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 865 AAGGGAGCTTTTCCAAAAGGAATCTCGAACCTTCAGAGTTTGCAGTACTTCATAATGGAT 924
Query 898 AATAACCCAATGTTCGTTGCTCTCCCTGTTGAATTAGGGTTCCTACCTAAACTTCAAGAG 957
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 925 AATAACCCAATGTTCGTTGCTCTCCCCGTTGAATTAGGGTTTCTTCCTAAACTTCAAGAG 984
Query 958 CTCCAGCTCGAGAATTCAGGATATTCCGGCGTAATCCCGGAGAGTTACACCAAATTGATG 1017
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 985 CTCCAGCTCGAGAATTCTGGATATTCCGGCGTAATCCCGGAGAGTTACACCAAATTGACG 1044
Query 1018 AACCTTAGCTCGTTGTCTCTGGCTAACAACAGATTAGCCGGCGAAATCCCATCTGGGTTT 1077
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 1045 AACCTTAGCTCGTTGTCTCTTGCTAACAACAGATTAACCGGCGAAATCCCATCAGGGTTT 1104
Query 1078 GAGTCACTGCCTCACGTTTTCCATCTGAATTTCAGCAGGAACTTACTGATCGGCGTCGTA 1137
||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1105 GAGTCTCTGCCACACGTTTTCCATCTGAATCTCAGCAGGAACTTACTGATCGGCGTTGTT 1164
Query 1138 CCGTTTGATTCGAGTTTCTTAAGACGGTTGGGTAAAAACTTGGATTTGAGCGGGAACAGA 1197
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1165 CCGTTTGATTCAAGTTTCTTAAGACGGTTGGGTAAGAACTTGGATTTGAGCGGGAACAGA 1224
Query 1198 GGATTGTGTTTGAACCCGGAGGATGAGTTCAGTGTCGTTAAGACCGGAGTTGATGTCTGC 1257
||||||||| |||| |||||||||||||| ||||| || |||||||| |||||||| |||
Sbjct 1225 GGATTGTGTCTGAATCCGGAGGATGAGTTTAGTGTTGTCAAGACCGGGGTTGATGTATGC 1284
Query 1258 GGGAAGAATGTTACTGGTGGTGGAGTTTTACCGGTGTATTCACCGAAGAAGAAATCTCAA 1317
|||||||| |||| | ||||||||| |||| ||||| ||||| |||||||||||||||||
Sbjct 1285 GGGAAGAACGTTAGTAGTGGTGGAGGTTTATCGGTGCATTCATCGAAGAAGAAATCTCAA 1344
Query 1318 GCTGCTCCTTCTCGGTATTACAGATCTTGCTTCTTCTCCAATGCTCTGTTTCAATTTGCT 1377
||| || | | ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1345 GCT--TC-T-C--GGTATTACAGATCTTGCTTCTTCGCCAATGCTCTGTTTC------C- 1391
Query 1378 CTGTTTCAATTTGCTCTGTTTCTTAG-TTTACATCAACGATTGGTTCTCTAAGAGGGAGG 1436
|||| ||||||||||| || |||||||||||||| ||||||||||||| |||
Sbjct 1392 --GTTT------GCTCTGTTTCT-AGGTTTACATCAACGATGGGTTCTCTAAGAGTGAG- 1441
Query 1437 ATAAAGACAAAA 1448
||||||||||||
Sbjct 1442 ATAAAGACAAAA 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5