BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935175
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42860.1 | Symbols: | unknown protein; Has 446 Blast hits t... 516 1e-145
> AT2G42860.1 | Symbols: | unknown protein; Has 446 Blast hits
to 326 proteins in 94 species: Archae - 0; Bacteria - 32; Metazoa
- 113; Fungi - 93; Plants - 21; Viruses - 4; Other Eukaryotes
- 183 (source: NCBI BLink). | chr2:17833765-17835113
FORWARD LENGTH=1235
Length=1235
Score = 516 bits (279), Expect = 1e-145
Identities = 379/424 (89%), Gaps = 19/424 (4%)
Strand=Plus/Plus
Query 2 GGACACATAGCAGAACAGGAATGGAAAAGGTA---G--G-TGA--AG-AGACCATTGAAG 52
||||||||| ||||||||| |||||||||||| | | ||| || ||||||||||||
Sbjct 75 GGACACATACCAGAACAGGGATGGAAAAGGTAGGTGAAGATGAGGAGAAGACCATTGAAG 134
Query 53 AACCAAACAACTCAATTGACGAGACGAGGAGTGA-AGAGGAAGATGAAAGGATAAGAGGT 111
|| |||||||||||| ||| ||||||| |||||| | | || || |||||||||| ||||
Sbjct 135 AAGCAAACAACTCAACTGAGGAGACGAAGAGTGATA-AAGAGGAGGAAAGGATAAAAGGT 193
Query 112 A-TAATTGCTGATCGGGTTGATCCAGTAGATTCCACAGAAGAAGGCTCTACGGGTCCATC 170
| | |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 194 ACT-ATTGCTGATCAGGTTGATCCAGTAGATTCCACTGAAGAAGGTTCTACGGGTCCATC 252
Query 171 CAACTCACACACTATAGTCTCCAAAGATCATGATTTTAGTGAATCTGATATGGAGGACGA 230
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CAACTCACACACTGTAGTCTCCAAAGATCATGATTTTAGTGAATCTGATATGGAGGACGA 312
Query 231 AGAGCAGGTTCTTGAGTTTTTCAGACGTAGT-AGTGGTTTG-CTACCTGAGGTCGCCAAG 288
|||||||||||| |||||||||||||||| | | ||||| | |||||||||| |||||
Sbjct 313 AGAGCAGGTTCTCGAGTTTTTCAGACGTAATCAC-GGTTTTTC-ACCTGAGGTCACCAAG 370
Query 289 AGAAACAACTTCCCTTATCTTAACAAATCCGAA-GGAATGGTACTTCAGTTCCAAGAAGG 347
|||||||||||||| ||| ||||||| || ||| ||| |||||||||||||||||||||
Sbjct 371 AGAAACAACTTCCCATATGTTAACAACTCTGAAAGGA-TGGTACTTCAGTTCCAAGAAGA 429
Query 348 CACTCCTGCAGAAACAGAACAAACAAATGTAATGTTCCACAGTTTGAATGATAGCAACGA 407
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 430 CACTTCTGCAGAAACAGAACAAACAAATGAAATGTTCCACAGTTTGAATGATAGCAACGA 489
Query 408 GATT 411
||||
Sbjct 490 GATT 493
Score = 481 bits (260), Expect = 5e-135
Identities = 284/296 (96%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 451 CTTGAAGGAATCAAGTCATCATCAGCTTCAGATGAGGATACCGAGGACTCATCTAGTAAC 510
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CTTGAAGGAACCAAGTCATCATCAGCTTCAGATGAGGATACCGAGGACTCATCTAGTAAC 553
Query 511 TCAGACCTTGATTCTAGCCTTTCCAGGTATTATTTTGACGGATCCTTACCGGTTTCAGCT 570
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCAGACCTTGATTCCAGCCTTTCCAGGTATTATTTTGACGGATCCTTACCGGTTTCAGCT 613
Query 571 CATGTCGAAGAATTTGAAACCCATCAAGATGAATCCCCTGTACCTAAACATGAAAACCAG 630
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 614 CATGTCGAAGAATTTGAAACTCATCAAGATGAATCCCTTGTACCTAAAGATGAAAACCAG 673
Query 631 ATGCCTCTGTTGTGCCTCAAGCAACCCGTGCTGCAACCAACATCATGGAGAAATTGCTGT 690
||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 674 ATGCCTCTGCTGTGTCTCAAGCAACCCATGCTGCAACCAACTTCATGGAGAAATTGCTGT 733
Query 691 GGACTCCTCGAGCTTCTCTGGGCTGCTGATCCATAAAATTCAGGTACGAAGAAAAT 746
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 734 GGACTCCTCGAGCTTCTCTGGGCTGCTGATCCATAAATTTCAGATACGAGGAAAAT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5