BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935176

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42870.1 | Symbols: PAR1, HLH1 | phy rapidly regulated 1 | c...   614    2e-175


> AT2G42870.1 | Symbols: PAR1, HLH1 | phy rapidly regulated 1 | 
chr2:17836416-17837250 REVERSE LENGTH=835
Length=835

 Score =  614 bits (332),  Expect = 2e-175
 Identities = 372/391 (95%), Gaps = 3/391 (1%)
 Strand=Plus/Plus

Query  7    tctctctctctcCTTCAATGGAAGAAACTTTAGCCACTCCCGACACCACGAGACGCTCTC  66
            ||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  47   TCTCTCTCTTTCTTTCAATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTC  106

Query  67   TGTCACCGTCGTGCTCAGCCGCCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCA  126
            |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  107  TGTCACCGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCA  166

Query  127  AACGGAGATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGGgaagaag-a-a-gaag  183
            ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||
Sbjct  167  AACGGAGATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGAGAAGAAGCAGAAGAAG  226

Query  184  aagaagaCGAGGTAAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAACGG  243
            ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  227  AAGAAGATGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGG  286

Query  244  CGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTATGTCTCTACAATGTC  303
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  287  CGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTC  346

Query  304  AGATCAAAACCATTAAAGTTCTTACTTCGTTTCTCCAACGCGTAGATCAAGAAGACATGA  363
            ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct  347  AGATCAAAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGA  406

Query  364  AGTTCGGAGGTTGAAGATGACCACACCAAGA  394
            |||||||||||||||||| | ||||||||||
Sbjct  407  AGTTCGGAGGTTGAAGATTATCACACCAAGA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5