BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935184

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) s...   610    4e-174
  AT2G42930.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   568    2e-161


> AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) 
superfamily protein | chr2:17858698-17863466 FORWARD LENGTH=4026
Length=4026

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 423/465 (91%), Gaps = 18/465 (4%)
 Strand=Plus/Minus

Query  1     AGCAAGAAATTTATCAGAAAATGAAGACGAAGATGTTAATAACCCTCTTTGCACTTA-TT  59
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  2513  AGCAAGAAATTTCTCAGAAAATGAAGACGAAGATGTTAATAACCCTCTTTGCACT-AGTT  2455

Query  60    TCAGTAGCAGGAACATCAGAAGCGACTGGTAGACTGGCTGCACAGCAGAACACAAGCATT  119
             ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  2454  TCAGTAGCAGGAACATCAGAAGCGACTGGTACACTTGCTGCACAGCAGAACACAAGCATT  2395

Query  120   ATACCTACATACTCACTCTGGTGCGTGGAAAATCCATATGCCTACTTTACAAGAGTGATT  179
             |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  2394  ATACCTACATACACACTCTGGTGCATGGAAAATCCATATGCCTACTTTAGAAGAGTGATT  2335

Query  180   TGGAACCTAAAATGGGCTTGCAAAAATGGTGCTGATTGCTCACCATTGGCAAAGGGTGGC  239
             | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  2334  TCGAGCCTAAAATGGGCTTGCAAAAATGGTGCTGATTGCTCACCATTGGAAAAGGGTGGC  2275

Query  240   CGTTGTCAAGACCTCGACTATTACAGAAGCCGAGCTTCTTATGTC-TTCAATGACTATTA  298
             |||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||
Sbjct  2274  CGTTGTCAAGACCTCGACAATTACAGAAGCCAAGCTTCTTATG-CATTCAATGACTATTA  2216

Query  299   CCAGAAGAATCCTATACCGAGAAACTGCGATTTCGGTGGCGCTGCTGTGCTTACAATTCA  358
             |||||||||||||||||| |||||||||||||||  ||| ||||||||||||||| ||||
Sbjct  2215  CCAGAAGAATCCTATACCCAGAAACTGCGATTTCAATGGTGCTGCTGTGCTTACAGTTCA  2156

Query  359   AGATCCAAGTAATTCCAAACACTTCACTTTCGAAAAAATAAAAC-----TC--A--AAA-  408
              || ||||||||| | |||||||| || ||||||||||||||||     ||  |  ||| 
Sbjct  2155  GGACCCAAGTAATACTAAACACTTTACATTCGAAAAAATAAAACCAACCTCTGATCAAAA  2096

Query  409   T-CACTAGAGTTCCATTGTGATAGTGTCTGCA--CGTCAGAACTG  450
             | | |||||||||||||||||||||||||  |  |||||||||||
Sbjct  2095  TTC-CTAGAGTTCCATTGTGATAGTGTCTATATACGTCAGAACTG  2052


> AT2G42930.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr2:17860868-17861272 REVERSE LENGTH=405
Length=405

 Score =  568 bits (307),  Expect = 2e-161
 Identities = 362/388 (93%), Gaps = 5/388 (1%)
 Strand=Plus/Plus

Query  21   ATGAAGACGAAGATGTTAATAACCCTCTTTGCACTTA-TTTCAGTAGCAGGAACATCAGA  79
            |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  1    ATGAAGACGAAGATGTTAATAACCCTCTTTGCAC-TAGTTTCAGTAGCAGGAACATCAGA  59

Query  80   AGCGACTGGTAGACTGGCTGCACAGCAGAACACAAGCATTATACCTACATACTCACTCTG  139
            ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct  60   AGCGACTGGTACACTTGCTGCACAGCAGAACACAAGCATTATACCTACATACACACTCTG  119

Query  140  GTGCGTGGAAAATCCATATGCCTACTTTACAAGAGTGATTTGGAACCTAAAATGGGCTTG  199
            |||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct  120  GTGCATGGAAAATCCATATGCCTACTTTAGAAGAGTGATTTCGAGCCTAAAATGGGCTTG  179

Query  200  CAAAAATGGTGCTGATTGCTCACCATTGGCAAAGGGTGGCCGTTGTCAAGACCTCGACTA  259
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  180  CAAAAATGGTGCTGATTGCTCACCATTGGAAAAGGGTGGCCGTTGTCAAGACCTCGACAA  239

Query  260  TTACAGAAGCCGAGCTTCTTATGTC-TTCAATGACTATTACCAGAAGAATCCTATACCGA  318
            ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct  240  TTACAGAAGCCAAGCTTCTTATG-CATTCAATGACTATTACCAGAAGAATCCTATACCCA  298

Query  319  GAAACTGCGATTTCGGTGGCGCTGCTGTGCTTACAATTCAAGATCCAAGTAATTCCAAAC  378
            ||||||||||||||  ||| ||||||||||||||| |||| || ||||||||| | ||||
Sbjct  299  GAAACTGCGATTTCAATGGTGCTGCTGTGCTTACAGTTCAGGACCCAAGTAATACTAAAC  358

Query  379  ACTTCACTTTCGAAAAAATAAAACTCAA  406
            |||| || |||||||||||||||| |||
Sbjct  359  ACTTTACATTCGAAAAAATAAAAC-CAA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5