BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935186
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42950.1 | Symbols: | Magnesium transporter CorA-like famil... 1652 0.0
> AT2G42950.1 | Symbols: | Magnesium transporter CorA-like family
protein | chr2:17863819-17866487 FORWARD LENGTH=1826
Length=1826
Score = 1652 bits (894), Expect = 0.0
Identities = 985/1030 (96%), Gaps = 2/1030 (0%)
Strand=Plus/Plus
Query 417 GTGCCTGTCAGAGTTGCTGGTGGGCTGCTGTTTGAGCTGTTGGGACAATCAGCGGGTGAT 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 739 GTGCCTGTCAGAGTTGCTGGTGGGTTGCTGTTTGAGCTGTTGGGACAATCAGCGGGTGAT 798
Query 477 CCTTTTATCCAAGAAGATGACATACCTATTGTCTTAAGGTCATGGCAAGCACAGAATTTT 536
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 799 CCTTTCATCCAAGAAGATGACATACCTATTGTCTTAAGGTCTTGGCAAGCACAGAATTTT 858
Query 537 CTGGTGACTGCATTGCACGTCAAAGGCTTTTCCTTTAACATTAGTGTGTTAGGTATTACA 596
|||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||
Sbjct 859 CTGGTGACTGCATTGCACGTTAAAGGCTTTGCCTTGAACATTAGTGTCTTAGGTATTACT 918
Query 597 GAAGTCCAGGAAATGCTTATTGCTGGTGGAGCCTGCATTCCGAGAACCGTTCATGAACTA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAAGTCCAGGAAATGCTTATTGCTGGTGGAGCCTGCATTCCGAGAACCGTTCATGAACTA 978
Query 657 ATAGCACATCTTGCTTGCCGCCTTGCACGCTGGGATGATAGGCTATTCCGGAAGTATGTA 716
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 979 ATAGCACATCTTGCATGCCGCCTTGCACGCTGGGATGATAGGCTATTCCGGAAGTATATA 1038
Query 717 TTTGGTGCAGCTGATGAAGTTGAGTTGATGTTTATGAACAAGAGGCTGTACGAGGATTTA 776
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1039 TTTGGTGCAGCTGATGAAGTTGAGTTGATGTTTATGAATAAGAGACTGTACGAGGACCCA 1098
Query 777 AATCTGTTCACTACAATCTTGAATCAAGAGATCAGAAGGCTCTCGACCCAGGTTATACGG 836
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1099 AATCTGTTCACTACAATCTTGAATCAAGAGATCAGAAGGCTGTCGACCCAGGTTATACGG 1158
Query 837 GTGAAATGGTCGCTTCATGCTAGAGAAGAGATTGTGTTCGAGCTTCTTCAGCAACTAAAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GTGAAATGGTCGCTTCATGCTAGAGAAGAGATTGTGTTCGAGCTTCTTCAGCAACTAAAA 1218
Query 897 GGCAATAGAACAAAAGACTTGCTAGAAGGAATAAAAAAGAGCACCCGCGATATGATCAAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GGCAATAGAACAAAAGACTTGCTAGAAGGAATAAAAAAGAGCACCCGCGATATGATCAAT 1278
Query 957 GAGCAAGAAGCCGTTCGTGGTCGGTTATTCACTATCCAAGACGTCATGCAAAACACGGTT 1016
|| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1279 GAACAAGAGGCCGTGCGAGGTCGGTTATTCACTATCCAAGATGTCATGCAAAACACGGTT 1338
Query 1017 CGAGCATGGTTACAGGACCGGAGCCTCACGGTCACACACAACCTAGGAATCTTTGGAGGA 1076
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1339 CGAGCATGGTTACAGGACCAGAGCCTCACGGTCACACATAACCTAGGAATCTTTGGAGGA 1398
Query 1077 GTCGGTCTTTTGCTTACAATAGTGACCGGTCTATTTGGAATCAACGTAGATGGGATACCT 1136
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 GTCGGTCTTTTGATTACAATAGTGACCGGTCTATTTGGAATCAACGTAGATGGGATACCA 1458
Query 1137 GGAGCTAAAGATTTTCCACACGCCTTTGTGCTTTTCTCAG-CGGTTCTCTTCTTCTCTGG 1195
|| || |||||||||||||| ||||||| ||||||||||| || |||| ||| |||| ||
Sbjct 1459 GGTGCCAAAGATTTTCCACAAGCCTTTGCGCTTTTCTCAGTCG-TTCTGTTCGTCTCAGG 1517
Query 1196 TTTGGTGTTAGTGGTTGCTGCTTTACTCTACCTTGGACTCAAGGAGCCAGTGGCAGAAGA 1255
||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1518 TTTGGTGCTAGTGGTCGCTGGTTTAATCTACCTTGGACTCAAGGAGCCAGTGGCAGAAGA 1577
Query 1256 GAATGTGGAGACTAGGAAATTAGAGCTTGACGAAATGGTAAAGAAGTTTCAACGAGAAGC 1315
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1578 GAATGTGGAGACTAGGAAACTAGAGCTTGACGAAATGGTGAAGAAGTTTCAACAAGAAGC 1637
Query 1316 TGAGTCTCACGCTCAGGTCTGCAAAAAAGTTCCTCAGAACAGAGAACGTACGACTAGTAG 1375
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1638 TGAGTCTCATGCTCAGGTCTGCAAAAAAGTTCCTCAGAACATAGAACGTACGACTAGTAG 1697
Query 1376 TAGTAGAATGATAGTCCATGACCCGAATGGTTACGTTCTCTTGGAATGAAATCAATCCGG 1435
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1698 AAGTAGAATGATAGTCCATGATCCGAATGGTTACGTTCTCTTGGAATGAAATCAATCCGG 1757
Query 1436 TTTATGATTG 1445
||||||||||
Sbjct 1758 TTTATGATTG 1767
Score = 497 bits (269), Expect = 1e-139
Identities = 373/420 (89%), Gaps = 19/420 (5%)
Strand=Plus/Plus
Query 15 TGAAGTATGAATGCGAATCAC---AAC--G-A--C-GGTTATCATAATCTCTGGACCAAT 65
||||| ||||||||||||||| ||| | | | ||||| ||||||||||||||||||
Sbjct 235 TGAAGCATGAATGCGAATCACAAGAACGGGAATCCAGGTTACCATAATCTCTGGACCAAT 294
Query 66 GGACTTATCTGTGCTTTCGAGTTTTGTCAAGGTCGTCGTAAGAACACCACAAGTGTTCAC 125
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 295 GGACTTATCTGTGCTTTCGAGTTTTGTCAAGGTCGTCGTAAGAATAACACAAGTGTCCAT 354
Query 126 GGAGATTCG----TCAG-AGAACTCACTCA-GAATAAAGAAACAG--GAATTTGGTGCTG 177
||||||||| |||| | || | || |||| ||||||| |||||||| |||
Sbjct 355 GGAGATTCGTCTCTCAGAATAA-AGAAACAGGAAT-GTGAAACAGATCAATTTGGTACTG 412
Query 178 GTGAAGAAGAAGAACACTCGCGGAGTTATTGGCGAGGAATTGGATGGGATAGGATCTCTG 237
||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 413 GTGAAGACGAAGAACATTCTAGGAGTTATTGGCGAGGAATTGGATGGGATAGGATCTCTG 472
Query 238 AGCTTGTTCAGACTGTGCAAGTTGATAATACCTGGGAATTGCGAAATATTGACTTAGATG 297
|||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 473 AGCTTGTTCAGACTGTTCAAGTTGATAATAATTGGGATTTGCGAAAGATTGACTTAGATG 532
Query 298 AGGATGAAGCCACTGTTGCTGAGCTTGCTGCTCCTTACTGGGAACGACCACTTGCAGGTC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 533 AGGATGAAGCCACTGTTGCTGAGCTTGCTGCTCCTTACTGGGAACGACCACTTGCTGGTC 592
Query 358 CAACTTGGTGGTGTCATGTTGATGCTAGCCATCAAGGTATTGCCTCGTGGTTACGTAATG 417
||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 593 CAACTTGGTGGTGTCATCTTGATGCTACCCATCATGGTATTGCCTCGTGGTTACGTAATG 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5