BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935189
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42980.1 | Symbols: | Eukaryotic aspartyl protease family p... 2449 0.0
AT3G59080.1 | Symbols: | Eukaryotic aspartyl protease family p... 1053 0.0
> AT2G42980.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:17875005-17876588 REVERSE LENGTH=1584
Length=1584
Score = 2449 bits (1326), Expect = 0.0
Identities = 1510/1597 (95%), Gaps = 20/1597 (1%)
Strand=Plus/Plus
Query 21 ATGTCGACCAAACTCAGTATA---ATTCTTGGCCTGATTTTGTTCTCTGTCTCACCATTT 77
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGACCAAACTCAGTATATTTCTTCTTGGCCTGATTTTGTTCTCTGTCTCACCATTT 60
Query 78 TCCGGCGACTGTAGAACTCTTTCCA-GGAAACATGATCATAACTCTTCATCCCTTTAC-G 135
||||| |||||||||||||||| || |||||||||| ||| |||||||||||||| ||
Sbjct 61 TCCGGAGACTGTAGAACTCTTT-CAGGGAAACATGAGCATTACTCTTCATCCCTTAACAT 119
Query 136 GCTTTAATTCCCAAGATACGATGCGTTTCGGTTCTGTC-TCTTCTTCCACAAGCAACGAT 194
| ||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||
Sbjct 120 G-TTTAATTCCCAAGATACGATGCGTTTCAGTTCTG-CTTCTTCTTCAACAAGCAACGAT 177
Query 195 TGTGGTTTCTCCTCCAAGGAACATGATCCTGCCAAGGAACATACCAGAGAATCGGTGAAG 254
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 TGCGGTTTCTCCTCCAAGGAACATGATCCTTCCAAGGAACATACCAGAGAATCGGTGAAG 237
Query 255 CTTCATTTAAGGCGCAGGGAGATTAAACAAGAAACAAAGAGAACAACACACTCAGTTGTT 314
| | | || || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 238 C--C--TCAA---TCA-AG-GATTAAACAAGAAACAAAGAGAACAACACATTCAGTTGTT 288
Query 315 GATCTTCAAATCCAAGACCTCACAAGAATTCAGACGCTTCACGCACGGTTTAAGAAATCG 374
|||||||||||||||||||||||||||||| |||||||||| || ||||| || ||||||
Sbjct 289 GATCTTCAAATCCAAGACCTCACAAGAATTAAGACGCTTCATGCTCGGTTCAACAAATCG 348
Query 375 AAGAAACAGAGAAACGAGAAGGTTAAGAAGAAGATTACTTCAGATATTTCTTTGGTGGGA 434
|||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 349 AAGAAACAGAAAAACGAGAAGGTTAGGAAGAAGATTACCTCAGATATTTCTTTGGTGGGA 408
Query 435 GCTCCAGAGGCTTCACCGGGGAAGCTGATAGCAACACTTGAGTCTGGTATGACTCTCGGT 494
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 GCTCCAGAGGTTTCACCGGGGAAGCTGATAGCAACACTTGAGTCTGGTATGACGCTCGGT 468
Query 495 TCTGGTGAATACTTCATGGACGTGCTTGTGGGCACACCACCAAAACACTTCTCATTGATT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCTGGTGAATACTTCATGGACGTGCTTGTGGGCACACCACCAAAACACTTCTCATTGATT 528
Query 555 CTTGACACAGGGAGTGACTTAAACTGGCTCCAATGCCTTCCTTGCTACGACTGTTTCCAC 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CTTGACACAGGGAGTGACTTAAACTGGCTCCAATGCCTTCCTTGCTACGACTGTTTCCAT 588
Query 615 CAAAACGA-AGCGTTTTATGACCCGAAAACGTCCGCTTCATTCAAGAACATAACATGCAA 673
||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 589 CAAAACGGTAT-GTTTTATGATCCAAAAACGTCCGCTTCATTCAAGAACATAACATGCAA 647
Query 674 TGACCCTAGATGCAGCCTCATCTCATCACCCGAGCCTCCAGTACAGTGCAAATCAGATAA 733
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 648 TGACCCTAGATGCAGCCTTATCTCATCACCCGATCCTCCAGTACAGTGCGAATCAGATAA 707
Query 734 CCAATCGTGCCCTTATTTCTACTGGTATGGAGACAGATCGAACACAACTGGAGATTTCGC 793
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 708 CCAATCGTGCCCTTATTTCTACTGGTATGGAGACAGGTCGAACACAACTGGAGATTTCGC 767
Query 794 GGTTGAGACCTTCACCGTTAATCTCACGACCACTGAGGGAAGAAGTTCAGAGTATAAGGT 853
||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 768 GGTTGAGACTTTCACCGTTAATCTCACGACCACTGAGGGAGGAAGCTCAGAGTACAAGGT 827
Query 854 GGAAAATATGATGTTTGGGTGTGGTCATTGGAACCGAGGTCTCTTCAGTGGTGCTTCAGG 913
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 828 GGGAAATATGATGTTTGGGTGTGGCCATTGGAACCGAGGTCTCTTCAGTGGTGCTTCAGG 887
Query 914 TCTGCTTGGGTTAGGGAGAGGACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGG 973
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCTGCTTGGGTTAGGAAGAGGACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGG 947
Query 974 CCATTCCTTTTCCTATTGTCTTGTCGATAGAAACAGCGACACCAATGTAAGCAGCAAGTT 1033
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 948 CCATTCCTTTTCCTACTGTCTTGTCGATAGAAACAGCAACACCAATGTAAGCAGCAAGTT 1007
Query 1034 GATATTTGGAGAAGACAAAGATTTGCTGAACCACACAAATCTGAACTTCACTTCTTTTGT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GATATTTGGAGAAGACAAAGATTTGCTGAACCACACAAATCTGAACTTCACTTCTTTTGT 1067
Query 1094 GAACGGGAAGGAGAATTCTGTGGAGACGTTTTACTATATACAGATCAAATCCATTCTAGT 1153
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1068 GAACGGGAAGGAGAATTCAGTGGAGACATTTTACTATATACAGATCAAATCCATTCTAGT 1127
Query 1154 CGGCGGCGAAGCTCTGGACATACCTGAAGAAACATGGAATATCTCACCAGATGGTGCTGG 1213
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1128 CGGCGGCAAAGCTCTAGACATACCTGAAGAAACATGGAATATCTCATCAGATGGTGATGG 1187
Query 1214 TGGAACCATCATTGATTCCGGGACAACCTTAAGCTATTTCGCAGACCCTGCATATGAGAT 1273
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1188 TGGAACCATCATTGATTCTGGTACAACCTTAAGCTATTTCGCAGAACCTGCATATGAGAT 1247
Query 1274 CATAAAAAACAAGTTTGCAGAGAAAATGAAAGAGAACTACCTGGTGTTTAGAGATTTCCC 1333
||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 1248 CATCAAAAACAAGTTTGCAGAGAAAATGAAAGAAAACTACCCAATATTTAGAGATTTCCC 1307
Query 1334 GGTCCTTGATCCTTGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCATCTGCCGGA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1308 GGTCCTTGATCCTTGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCACCTACCTGA 1367
Query 1394 GCTCGGGATTGCATTTGCAGACGGCGCAGTTTGGAATTTCCCTGCTGAGAACTCCTTCAT 1453
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1368 GCTCGGGATTGCATTTGTAGACGGCACAGTTTGGAATTTCCCTGCTGAGAACTCCTTCAT 1427
Query 1454 TTGGTTGAGTGAGGATTTGGTTTGCTTGGCAATTCTAGGAACTCCTAAATCTACATTCTC 1513
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1428 TTGGTTGAGCGAGGATTTGGTTTGCTTGGCAATTCTAGGAACTCCAAAATCTACCTTCTC 1487
Query 1514 GATCATCGGAAACTACCAACAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAG 1573
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GATCATCGGAAACTACCAGCAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAG 1547
Query 1574 GCTAGGGTTTACACCCACAAAGTGTGCGGACATATAA 1610
||||||||| |||||||||||||||||||||||||||
Sbjct 1548 GCTAGGGTTCACACCCACAAAGTGTGCGGACATATAA 1584
> AT3G59080.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:21836579-21838620 FORWARD LENGTH=2042
Length=2042
Score = 1053 bits (570), Expect = 0.0
Identities = 974/1165 (84%), Gaps = 44/1165 (4%)
Strand=Plus/Plus
Query 465 GCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGTGAATACTTCATGGACGTGCTT-GT 523
||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||
Sbjct 702 GCAACACTTGAGTCTGGTATGACTCTCGGTTCTGGCGAGTACTTCATGGACGTG-TTGGT 760
Query 524 GGGCACACCACCAAAACACTTCTCATTGATTCTTGACACAGGGAGTGACTTAAACTGGCT 583
|| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 761 TGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACTTAAACTGGAT 820
Query 584 CCAATGCCTT-CCTTGCTACGACTGTTTCCACCAAAACGAAGCGTTTTATGACCCGAAAA 642
||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 821 TCAATG-CTTGCCTTGCTACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTAAAG 879
Query 643 CGTCCGCTTCATT-CAAGAACATAACATGCAATGACCCTAGATGCAGCCTCA-TCTCATC 700
| || ||||| || |||||||||||| |||||||||| ||||||| ||| | |||||||
Sbjct 880 CCTCTGCTTC-TTACAAGAACATAACTTGCAATGACCAAAGATGCAACCT-AGTCTCATC 937
Query 701 ACCCGAGCCTCCAGTACAGTGCAAATCAGATAACCAATCGTGCCCTTATTTCTACTGGTA 760
||| || |||||| | | |||||||||||||||||||| |||||||| | |||||||||
Sbjct 938 ACCTGACCCTCCAATGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGTA 997
Query 761 TGGAGACAGATCGAACACAACTGGAGATTTCGCGGTTGAGACCTTCACCGTTAATCTCAC 820
||| || || || ||||| || |||||||| || || ||||| ||||| ||||| |||||
Sbjct 998 TGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTAGAGACTTTCACGGTTAACCTCAC 1057
Query 821 GACCACTGAGGGAAGAAGTTC--AG-AGTATAAGGTGGAAAATATGATGTTTGGGTGTGG 877
|| || | ||| | || || || |||||| || |||||||||||||| || || ||
Sbjct 1058 GA-CA--AATGGAGGGAGCTCGGAGTTGTATAATGTTGAAAATATGATGTTCGGTTGCGG 1114
Query 878 TCATTGGAACCGAGGTCTCTT-CAGTGGTGCTTCAGGTC-TGCTTGGGTTAGGGAGAGGA 935
||||||||||||||||||||| || ||||||| |||| | ||||||| ||||| |||||
Sbjct 1115 TCATTGGAACCGAGGTCTCTTCCA-TGGTGCTGCAGG-CTTGCTTGGTTTAGGAAGAGGC 1172
Query 936 CCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGGCCATTCCTTTTCCTATTGTCTT 995
|| ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| |||
Sbjct 1173 CCGCTTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCTTATTGCCTT 1232
Query 996 GTCGATAGAAACAGCGACACCAATGTAAGCAGCAAGTTGATATTT-GGAGAAGACAAAGA 1054
||||| ||||||||||| ||||| || || ||||| |||| ||| ||||||||||| ||
Sbjct 1233 GTCGACAGAAACAGCGATACCAACGTTAGTAGCAAACTGAT-TTTCGGAGAAGACAAGGA 1291
Query 1055 TTTGCTGAA-CCACACAAATCTGAACTTCACTTCTTTTGTGAAC-GGGAAGGAGAATTCT 1112
|||| | || ||| | ||||||||||||||||||||||| | ||||| || || ||
Sbjct 1292 TTTG-TTAAGTCACCCGAATCTGAACTTCACTTCTTTTGT-CGCTGGGAAAGA-AAACCT 1348
Query 1113 -GTGGAGACGTTTTACTATATACAGATCAAATCCATTCTAGTCGGC-GGCGAAGCTCTGG 1170
|| || || |||||||| |||| |||||||||||||||||| || || |||| |||
Sbjct 1349 CGTCGACACATTTTACTACGTACAAATCAAATCCATTCTAGTC-GCGGGAGAAGTTCTAA 1407
Query 1171 ACATACCTGAAGAAACATGGAATATCTCACCAGATGGTGCTGGTGGAACCATCATTGATT 1230
||||||||||||||||||||||||||||| ||||||| ||||| || || ||||||||||
Sbjct 1408 ACATACCTGAAGAAACATGGAATATCTCATCAGATGGAGCTGGAGGGACGATCATTGATT 1467
Query 1231 CCGGGACAACCTTAAGCTATTTCGCAGACCCTGCATATGAGAT-CATAAAAAACAAGTTT 1289
| || ||||||||||| || |||||||| ||||||||||| || ||| || |||||| ||
Sbjct 1468 CAGGTACAACCTTAAGTTACTTCGCAGAACCTGCATATGA-ATTCATCAAGAACAAGATT 1526
Query 1290 GCAGAGAAAA-TGAAAGAGAACTA-CCTGGTGTTTAGAGATTTCCCGGTCCTTGATCCTT 1347
|| |||||| | |||| ||| || || ||| | ||||||||| || |||| |||||||
Sbjct 1527 GCTGAGAAAGCT-AAAGGGAAGTATCC-GGTCTATAGAGATTTTCCAATCCTAGATCCTT 1584
Query 1348 GCTTCAATGTATCTGGCATAGAGGAGAACAACATCCATCTGCCGGAGCTCGGGATTGCAT 1407
||||||| || |||||||| | | | | || | ||||| ||||| |||||||| |
Sbjct 1585 GCTTCAACGTCTCTGGCATTCAT-A-A-CGT--TC-AGCTGCCAGAGCTTGGGATTGCTT 1638
Query 1408 TTGCAGACGGCGCAGTTTGGAATTTCCCTG-CTGAGAACTCCTTCATTTGGTTGAGTGAG 1466
||||||| ||||| |||||||| ||||| | | ||||| || ||||| ||||||| ||||
Sbjct 1639 TTGCAGATGGCGCTGTTTGGAACTTCCC-GACAGAGAATTCTTTCATATGGTTGAATGAG 1697
Query 1467 GATTTGGTTTGCTTGGCAATTCTAGGAACTCCTAAATCTA-CATTCTCGATCATCGGAAA 1525
|||||||||||||||||||| ||||||||||| ||||| | |||| || ||||| |||||
Sbjct 1698 GATTTGGTTTGCTTGGCAATGCTAGGAACTCCCAAATC-AGCATTTTCAATCATTGGAAA 1756
Query 1526 CTACCAACAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAGGCTAGGGTTTAC 1585
|||||| || |||||||| |||||||||||||||||||||||||||||||| |||| | |
Sbjct 1757 CTACCAGCAGCAGAATTTTCATATACTCTATGATACAAAGAGGTCTAGGCTCGGGTATGC 1816
Query 1586 ACCCACAAAGTGTGCGGACATATAA 1610
||| ||||||||||| || ||||||
Sbjct 1817 ACCTACAAAGTGTGCAGATATATAA 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80521674180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5