BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935190
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42990.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1722 0.0
> AT2G42990.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr2:17879031-17880563 FORWARD LENGTH=1441
Length=1441
Score = 1722 bits (932), Expect = 0.0
Identities = 1041/1095 (95%), Gaps = 2/1095 (0%)
Strand=Plus/Plus
Query 1 ATGCTAAACAAATTGTTGGCATGGCAACACATTATTTGTCACCATCAATATTATGCATTA 60
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 ATGCTAAACAAGTTGTTAGCATGGCAACACATTATTTGTCACCATCAATATTATGCATTA 65
Query 61 TTTTGATCACTCTTGTCTCCATCGCCGGAGCAAAAGTCCCGGCGATTATAGTCTTCGGTG 120
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 66 TTTTGACCACTCTTGTCTCCATCGCCGGAGCAAAAATCCCGGCGATTATAGTCTTCGGTG 125
Query 121 ACTCTTCCGTAGATTCCGGCAATAACAACTTCATATCAACAATGGCCAGAGCCAATTTCG 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 126 ACTCTTCCGTAGATTCCGGCAATAATAACTTCATATCAACAATGGCCAGAGCCAATTTTG 185
Query 181 AGCCTTATGGTCGTGACTTCCCGGGCGGCCGCGCAACCGGCCGTTTTTGTAATGGCCGTC 240
||||||| |||||||||||||| || || ||||| ||||| || |||||||| |||||||
Sbjct 186 AGCCTTACGGTCGTGACTTCCCTGGTGGTCGCGCCACCGGACGCTTTTGTAACGGCCGTC 245
Query 241 TCTCCTCTGATTTCACTTCCGAGGCTTATGGCCTTAAACCGACCATACCAGCCTACCTTG 300
||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 246 TCTCCTCCGATTTCACTTCCGAGGCTTATGGCCTTAAACCGACCGTGCCAGCCTACCTAG 305
Query 301 ATCCGTCCTATAATATCTCTGATTTTGCTACCGGAGTTTGCTTTGCCTCCGCCGGCACTG 360
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 306 ATCCGTCCTATAATATATCTGATTTTGCTACCGGAGTTTGTTTTGCCTCCGCCGGCACCG 365
Query 361 GTTATGATAATTCCACAGCCGATGTGCTTGGCGTGATTCCGTTATGGAAAGAGGTCGAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GTTATGATAATTCCACAGCCGATGTGCTTGGCGTGATTCCGTTATGGAAAGAGGTCGAGT 425
Query 421 ACTTCAAGGAATACCAAGGTAACCTTTACGCCTATCTCGGCCATCGGAGAGCTGCCAAAA 480
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 ACTTCAAGGAATACCAAAGCAACCTTTCCGCCTATCTCGGCCATCGGAGAGCTGCCAAAA 485
Query 481 TCATCAGAGAATCTCTGTACTTAGTCAGCATAGGAACCAATGATTTCCTTGAGAACTACT 540
|||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct 486 TCATCAGAGAATCTCTGTACATAGTAAGCATAGGCACCAACGATTTCCTTGAGAACTACT 545
Query 541 ACACATTACCGGACAGGAGATCTCAATTCAGCATCAGTCAGTACCAAGACTTCCTGATCG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 546 ACACATTACCGGACAGGAGATCTCAATTCAGCATCAGTCAGTACCAAGACTTCCTGGTCG 605
Query 601 ATATCGCCGAGGTGTTCTTGAAGGATC-TTTACAGACTCGGAGCTCGGAAAATGTCTTTC 659
| || || ||||||||||| ||||| | |||||||||| |||||||||||||||||||||
Sbjct 606 AGATTGCTGAGGTGTTCTTAAAGGA-CATTTACAGACTTGGAGCTCGGAAAATGTCTTTC 664
Query 660 ACCGGAATCTCGCCTATGGGATGTCTACCACTGGAGAGAGTGACGAATCTTGATGACCCT 719
|| |||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 665 ACTGGAATCTCACCTATGGGGTGTCTACCGCTGGAGAGAGTGACAAATCTTGACGACCCT 724
Query 720 TTTAGCTGTGCTCGGAGTTATAATGATTTGGCTGTCGATTTCAATGGGAGATTGAGAAGA 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 725 TTTAGCTGTGCTCGGAGTTATAATGATTTGGCTGTAGATTTCAATGGGAGATTGAGAAGA 784
Query 780 TTGGTGACGAAATTGAATAGAGAGCTTACTCGAATAAAGATATATTTCGCTAATCCTTAC 839
|||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 785 TTGGTGACAAAACTGAATAGAGAGCTTACTGGAATAAAGATTTATTTCGCTAATCCTTAC 844
Query 840 GATATCATGTGGGATATTGTTGCCAAACCTAATCTTTACGGTCTAGAGATATCTAGTTCT 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 845 GATATCATGTGGGATATTGTTACCAAACCTAATCTTTACGGTCTAGAGATATCAAGTTCT 904
Query 900 GCCTGTTGCGGTACGGGATTGTTCGAGATGGGATTTCTTTGCGGCCAGGACAATCCGTTA 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GCCTGTTGCGGTACTGGATTGTTCGAGATGGGATTTCTTTGCGGCCAGGACAATCCGTTA 964
Query 960 ACTTGCAGTGATGCCAATAAGTTCGTTTTCTGGGACGCATTTCACCCGACCGAGAAGACT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 965 ACTTGCAGTGATGCCAATAAGTTCGTTTTCTGGGACGCATTTCACCCGACCGAGAGGACT 1024
Query 1020 AATCAGATTGTGTCTGATCACTTCTCCAAGCATCTTAAGAATCTGTTTCATTGATCCTAA 1079
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1025 AATCAGATTGTGTCTGATCACTTCTTCAAGCATCTCAAGAATCTGTTTCATTGATCCTAA 1084
Query 1080 ATTCCTATATAATTT 1094
||||||||||| |||
Sbjct 1085 ATTCCTATATAGTTT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5