BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935201
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43080.1 | Symbols: AT-P4H-1 | P4H isoform 1 | chr2:17915561... 1528 0.0
> AT2G43080.1 | Symbols: AT-P4H-1 | P4H isoform 1 | chr2:17915561-17918754
FORWARD LENGTH=1201
Length=1201
Score = 1528 bits (827), Expect = 0.0
Identities = 862/879 (98%), Gaps = 2/879 (0%)
Strand=Plus/Plus
Query 1 GAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACAT 234
Query 61 TTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGG 294
Query 121 AAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGGCTTCGAGGCCAGAGCACCCGCT 180
||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 295 AAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCT 354
Query 181 ATCTACGAGATGTTTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCA 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCTACGAGATGTCTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCA 414
Query 241 ATGTCAAGCCCGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTAA 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 ATGTCAAGCCTGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTCA 474
Query 301 GTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTG 534
Query 361 TTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGATGTGAGGACAAGCTCTGGAATGT 420
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 535 TTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGACGTGAGGACAAGCTCCGGAATGT 594
Query 421 TTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAG 654
Query 481 TTTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGATATGAGCCGA 540
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGATATGAGCCGC 714
Query 541 AGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTGAAGCGTGGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 AGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTAAAGCGTGGTG 774
Query 601 GTCAACGAGTAGCAACAATGCTTATGTATCTAACTGATGACGTCGAAGGAGGAGAAACTT 660
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTCAGCGCGTAGCAACTATGCTTATGTATCTAACTGATGACGTCGAAGGAGGAGAAACTT 834
Query 661 ATTTCCCTTTGGCTGGTGATGGTGATTGCACCTGTGGTGGCAAAATCATGAAAGGCATCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATTTCCCTTTGGCTGGTGATGGTGATTGCACCTGTGGTGGCAAAATCATGAAAGGCATCT 894
Query 721 CTGTTAAACCCACCAAAGGAGACGCAGTTCTCTTCTGGAGCATGGGACTCGACGGACAGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CTGTTAAACCCACCAAAGGAGACGCAGTTCTCTTCTGGAGCATGGGACTCGACGGACAGT 954
Query 781 CAGATCCAAGGAGCATACATGGAGGATGTGAAGTTCTGTCTGGAGAGAAA-TGGTCTGCT 839
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 955 CAGATCCTAGGAGCATACATGGAGGATGTGAAGTTCTGTCTGGAGA-AAAGTGGTCTGCT 1013
Query 840 ACTAAATGGATGAGGCAAAAAGCTACTTCTTGAAGAACT 878
|||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACTAAATGGATGAGGCAAAAAGCTACTTCTTGAAGAACT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5