BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935207
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43130.1 | Symbols: ARA4, ATRAB11F, ATRABA5C, ARA-4, RABA5C ... 1116 0.0
> AT2G43130.1 | Symbols: ARA4, ATRAB11F, ATRABA5C, ARA-4, RABA5C
| P-loop containing nucleoside triphosphate hydrolases superfamily
protein | chr2:17929654-17930936 REVERSE LENGTH=922
Length=922
Score = 1116 bits (604), Expect = 0.0
Identities = 654/678 (96%), Gaps = 3/678 (0%)
Strand=Plus/Plus
Query 8 AGAAGAAGGAGAAATGTC-G--GACGACGAGAGAGGTGAAGAGTACCTCTTCAAGATTGT 64
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 20 AGAAGAAGGAGAAATGTCAGACGACGACGAGAGAGGCGAAGAGTACCTCTTCAAGATTGT 79
Query 65 TATCATCGGAGACTCCGCCGTCGGCAAATCCAATCTCCTCACTCGCTACGCCCGTAACGA 124
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TATCATCGGTGATTCCGCCGTCGGCAAATCCAATCTCCTCACTCGCTACGCCCGTAACGA 139
Query 125 GTTCAATCCCAATTCCAAAGCCACAATCGGCGTCGAGTTTCAGACTCAGAGCATGCTCAT 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 140 GTTCAATCCCAATTCCAAAGCCACTATCGGCGTCGAGTTTCAGACTCAGAGCATGCTCAT 199
Query 185 CGACGGCAAAGAGGTCAAAGCTCAGATTTGGGATACCGCCGGTCAGGAACGCTTCCGTGC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 200 CGACGGCAAAGAGGTCAAAGCTCAGATTTGGGATACCGCCGGTCAGGAACGCTTCCGCGC 259
Query 245 CGTTACTTCTGCTTATTACCGTGGCGCCGTTGGAGCTCTCGTCGTCTACGACATCACTCG 304
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 260 CGTTACATCTGCTTATTACCGTGGCGCCGTTGGAGCCCTCGTCGTCTACGATATCACTCG 319
Query 305 TAGCTCCACTTTCGAAAACGTCGGTCGCTGGCTCGATGAGCTCAACACTCATTCTGATAC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TAGCTCCACTTTCGAAAACGTCGGTCGCTGGCTCGATGAGCTCAACACTCATTCTGATAC 379
Query 365 AACAGTAGCAAAAATGCTTATTGGAAACAAATGTGATCTCGAGAGCATAAGAGCGGTGAG 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 380 AACAGTAGCAAAAATGCTTATTGGGAACAAATGTGATCTCGAGAGCATAAGAGCGGTGAG 439
Query 425 TGTTGAGGAAGGCAAGAGTCTTGCTGAGTCTGAAGGATTGTTTTTCATGGAGACATCTGC 484
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 440 TGTTGAGGAAGGCAAGAGTCTTGCTGAGTCTGAAGGTTTGTTTTTCATGGAGACCTCTGC 499
Query 485 GCTGGACTCGACCAATGTGAAGACGGCTTTTGAGATGGTTAGTCGGGAGATCTATAGTAA 544
| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 500 GTTGGACTCGACCAATGTAAAGACGGCTTTCGAGATGGTTATTCGGGAGATCTATAGCAA 559
Query 545 CATTAGTCGAAAGCAGTTGAACTCTGATTCTTACAAAGAGGAGCTGACCGTGAATCGAGT 604
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 560 CATTAGTCGAAAGCAATTGAACTCTGATTCTTACAAAGAGGAGCTGACTGTGAATCGTGT 619
Query 605 TAGCTTGGTTAAGAACGAGAACGAAGGAACAAAGACATTCTCTTGCTGTTCGAGGTAACA 664
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 620 TAGCTTGGTTAAGAACGAGAACGAAGGGACAAAGACATTCTCTTGCTGTTCGAGGTAACA 679
Query 665 TCTTTGTACCGGTTTCTC 682
|||||||| |||||||||
Sbjct 680 TCTTTGTAACGGTTTCTC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5