BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935213
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43180.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 2148 0.0
> AT2G43180.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr2:17953497-17955829 REVERSE LENGTH=1717
Length=1717
Score = 2148 bits (1163), Expect = 0.0
Identities = 1366/1466 (93%), Gaps = 5/1466 (0%)
Strand=Plus/Plus
Query 16 CTTCAATGGCGGCGCTAAGCTTTTGCAGCTCTTCTCCTCCTCGAATTCTTCACAAACAAT 75
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 51 CTTCAATGGCGGCACTTAGCTTTTGCAGCTCTTCTCCTCCTCGAATTCTTCATAAACAAT 110
Query 76 CCAACTCGAGCTTTTTT--C--CTTCTGACTCTTCTTCTTTCGCACAAACCGTCGGAGAA 131
|||| ||||| |||||| | |||||| ||||||||||||| |||||||||||||||||
Sbjct 111 CCAAATCGAG-TTTTTTCCCTTCTTCTGCCTCTTCTTCTTTCACACAAACCGTCGGAGAA 169
Query 132 TCATCTGCGAAACCCATCTCTGTCTCGAGACGATTTCATGTCGCCGTAAACTCCACCGCA 191
| || |||||| ||| |||||||||| |||||||||| || |||||| |||||||||| |
Sbjct 170 TTATTTGCGAACCCCTTCTCTGTCTCAAGACGATTTCGTGGCGCCGTTAACTCCACCGTA 229
Query 192 GTTTCCGATGAATCGGGAAACGCAAAACTACTATCTTCTCCGGCGAAGAAGCTAAGGGAG 251
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
Sbjct 230 GTTTCCGATGAATCGGGAAACGCGAAACTTCCATCTTCTCCGGCGAAGAAGCTAAGGAAT 289
Query 252 ATTATACAATCCCCTGGTTTTCTTCAGGGTCCATGTTGCTTCGATGCTCTTAGTGCCAAA 311
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ATTATGCAATCCCCTGGTGTTCTTCAGGGTCCATGTTGCTTCGATGCTCTTAGTGCCAAA 349
Query 312 CTCATCGAACGAGCTGGGTTTCCGTACTGTGTCACCACTGGGTTCTCAATTTCAGCGGCT 371
||||||||||||||||||||||| |||||| ||||| |||||||||| ||||||||| ||
Sbjct 350 CTCATCGAACGAGCTGGGTTTCCTTACTGTATCACCTCTGGGTTCTCGATTTCAGCGTCT 409
Query 372 CGGCTTGGTTTACCTGATAAAGGACTTATATCTTACGGAGAAATGTTTGATCAAGGTCAA 431
|||||||||||||| ||||| || || || ||||| ||||||||| ||||||||||||||
Sbjct 410 CGGCTTGGTTTACCGGATAAGGGTCTAATTTCTTATGGAGAAATGGTTGATCAAGGTCAA 469
Query 432 CAAATTACTCAATCTGTATCTGTTCCGGTGATTGGAGACGGTGGCAATGGATTCGGTAAT 491
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 470 CAAATTACTCAATCTGTATCAATTCCGGTGATTGGAGACGGTGGCAATGGATACGGTAAT 529
Query 492 GCCATGAATGTTAAGAGGACCGTCAAAGGATATATTAAAGCTGGCTTTGCAGGAATTATC 551
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GCCATGAATGTTAAGAGAACCGTCAAAGGATATATTAAAGCTGGCTTTGCAGGAATTATC 589
Query 552 ATTAATGATCAGGTTTGTTGTGACGATACTAAGAGTGAGAGAAGAGTGGTTTCTAGGGAG 611
|| |||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 590 ATCAATGATGAAGTTTGTTGTGAAAATACTAAGAGTGAGAGAAGAGTGGTTTCTAGAGAG 649
Query 612 GAAGCAGTGATGCGTATTAAAGCTGCGGTTGATGCGCGTAGAGAGTGTGGTTCCGACATT 671
||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 650 GAAGCAGTGATGCGTGTTAAAGCTGCGGTTGATGCACGTAGAGAGTGTGATTCGGACATT 709
Query 672 GTCATTGTAGCTCAAACTGATTCCCGAGAAGCGATATCTCTGGAGGAATCGCTCGTTAGG 731
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 710 GTAATTGTAGCTCAAACTGATTCCCGTGAAGCGATATCTCTGGAGGAATCACTCATTAGG 769
Query 732 GCAAGAGCTTTTACAGATGCTGGAGCAGATGTTCTCTCCGTTGATTCTCTTATTTCTAGA 791
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 770 GCAAGAGCTTTTACAGATGCTGGAGCTGATGTTCTCTCCGTTGATTCTCTTGTTTCTAGA 829
Query 792 CAAGAGATGAAATCATTCTGCAATGTCTATCCACTAGTTCCTAAATTGGCTAATATGCTG 851
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GAAGAGATGAAAGCATTCTGCAATGTCTATCCACTAGTTCCTAAATTGGCTAATATGCTT 889
Query 852 GAAAGTGGAGGGAAATTTCCGATACTAAACCCGCTTGAGCTAGAAGAGATTGGATATAAG 911
||||| ||||| ||| |||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 890 GAAAGCGGAGGAAAAATTCCAATTCTAAACCCGCTGGAGCTAGAAGAGATTGGATATAAG 949
Query 912 CTAGTGGCATATCCAATTTCATTGATTGGAGTATCTATTCAGGCAATGCAGGACGCTTTA 971
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 950 CTAGTGGCGTATCCAATTTCATTGATTGGAGTATCTATTCAAGCAATGCAGGACGCTCTA 1009
Query 972 TTGGCAATTAAGGGTGGTCGAATTCCTCCACCAGGAAGCATGGCATCTGTAGAAGAAATC 1031
|||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1010 TTGGCAATCAAGGGTGGGCGAATTCCTCCACCAGGAAGCATGGCGTCTTTAGAAGAAATT 1069
Query 1032 AAAGAGATTCTTGGTTTTGACACATACCAGGAGGAAGAGAAGCGGAATGCTACCTCCTCA 1091
||||||||||||||||||||| ||| |||| |||||||||||| | |||||||| |||
Sbjct 1070 GGAGAGATTCTTGGTTTTGACACTTACGAGGAAGAAGAGAAGCGGTACGCTACCTCGTCA 1129
Query 1092 TCAGATAGAGAAACGAGCAGCAGTAGCGTCTATGGTAATCAACGGGTGGCTCAAGATGAT 1151
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1130 TCAGATAGAGAAGTGAGCAGCAGTAGCGTCTATCGTAATCAACGGGTGGCTAAAGATGAT 1189
Query 1152 CCAGAACAGAGAGAGGACCCGATAGTTGAAGTCATAACACCTGAGGTTTATAATGAACCA 1211
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCAGAACAGAGAGAGGACCTGATTGTTGAAGTCATAACACCTGAGGTTTATAATGAACCA 1249
Query 1212 AGAAACCCCTTTTCGCGGATCTGGTCACGATCCTTGAGGATCAAAATCATCGGACGCGAC 1271
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1250 AGAAACCCCTTTTCGCGGATCTGGTCACGATCTTTGAGGATCAAAATCATCGGACGCGAT 1309
Query 1272 GGGTTTGAGAAACTCGATGTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACAAACATT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GGGTTTGAGAAACTCGATGTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACAAACATT 1369
Query 1332 GTTCCAGCTTTAGGAGGCGTGAACTTGAAGCAATTGATGGACGATGCAGCCGATGAGGTT 1391
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1370 GTTCCAGCTTTAGGAGGCGTGAACTTGAAGCAATTGATGGACGATGCAGCAGATGAGGTC 1429
Query 1392 GGAGGGAAACTTTTGTTAGATTTTAAAGACACTGCTGGTGACAGAATCCAAGTTTTTCTA 1451
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1430 GGAGGGAAAATTTTGTTAGATTTTAAAGACACTGCAGGTGACAGAATCCAAGTCTTTCTA 1489
Query 1452 GAATGACACACATGTAGTTAAGAAAA 1477
|||||||||||| |||| |||||||
Sbjct 1490 GAATGACACACACCTAGTGAAGAAAA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5