BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935214
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43190.1 | Symbols: | ribonuclease P family protein | chr2:... 1539 0.0
> AT2G43190.1 | Symbols: | ribonuclease P family protein | chr2:17955985-17958041
FORWARD LENGTH=1198
Length=1198
Score = 1539 bits (833), Expect = 0.0
Identities = 902/935 (96%), Gaps = 6/935 (1%)
Strand=Plus/Plus
Query 1 GTTAGTTGCTATCTAGCTGCAATGGGTACCCAGACGGTTGTGCATGATCAGGCTAGATGG 60
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 79 GTTAGTTGCTATCTAGCTGCAATGGGTACAGAGACGGTTGTGCATGATCAGGCAAGATGG 138
Query 61 GCAATGGCTGCAATGGAACGAAGGCTTGCTGTTGCGAAAGCTCAGCTTCTT---CAACAA 117
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 139 GCAATGGCTGCAATGGAACGAAGGCTTGCTGTTGCAAAAGCTCAGCTTCTTCAACAACAA 198
Query 118 CAACAGAAGAGTGAGAAAGACAAGAAGGGAACTTCTGATGTAGATGTCTCTACGAAAGAA 177
|||||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 199 CAACAGAAGAATGAGAAAGATAAGAAGGGGACTTCTGATGTAGATGTCTCTATGAAAGAA 258
Query 178 TCACATCAAGCTGATTCACTGCCTACTCCCTCAAAGACGTCGATTAAAAAAGTAGATCCC 237
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 259 TCTCATCAAGCTGATTCACTGCCTACTCCCTCAAAGACATCAATTAAAAAAGTAGATCCC 318
Query 238 AAGGATGATGATTCTGTTGCATATAC-AAGATTGTCCCATCCCGTTGATGAGAATTTGCT 296
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 319 AAGGATGATGATTCTGTTGCATATACAAAG-TTGTCCCATCCCGTTGATGAGAATCTGCT 377
Query 297 GGCAACCAATGTTAAGTTTTCTAGTGCAAAGGGAACTATAGTAGACAAGGTTTTGCATAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GGCAACCAATGTTAAGTTTTCTAGTGCAAAGGGAACTATAGTAGACAAGGTTTTGCATAA 437
Query 357 CCTTCTTCGAAGCGGTGACTCTGCTCAAAAGTACTTGCAAGGTACTAAAAGTGTGAAGCT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CCTTCTTCGAAGCGGTGACTCTGCTCAAAAGTACTTGCAAGGTACTAAAAGTGTGAAGCT 497
Query 417 GGACAACTATATCCTCCTTGATAACTTTGTACAGTCACGGTCTTCAGCCTCTGGTTCTAA 476
||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 498 GGATAACTATATCCTTCTTGATAATTTTGTACAGTCACGGTCTTCGGCCTCTGGTTCTAA 557
Query 477 AAAGGCATCACAGAAGGATTCAAAACGTTCTAGAAGCCGTATGTCTATGAAGCGACTCAA 536
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 558 AAAGGCATCACAGAAGGATTCAAAACGTTCTAAAAGCCGTATGTCTATGAAGCGACTCAA 617
Query 537 GAAATCTGGTGCTTTGCATATGCCTAAAGATCTCCAAAAGTTTGATTTGTTTAAGCCAAT 596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 618 GAAATCTGGTGCTTTGCATATCCCTAAAGATCTCCAAAAGTTTGATTTGTTTAAGCCAAT 677
Query 597 GCATTGTATGTGGGAAAGTTACATGATGAAACTCATCAAGGTGACCGGGAAGATTCAATT 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GCATGGTATGTGGGAAAGTTACATGATGAAACTCATCAAGGTGACCGGGAAGATTCAATT 737
Query 657 ATCTTTAACTCTTCTCTCAGCAGATCTTCACGGTGCTTTCATGTTTGTTGCTGAGTGCAA 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 738 ATCTTTAACTCTTCTCTCAGCAGATCTTCATGGTGCTTTCATGTTTGTTGCTGAGTGCAA 797
Query 717 GATAGCATCATTCACTGGTGTACAAGGCATAATGGTGCGCGAGACATCCGAAACATTTGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GATAGCATCATTCACTGGTGTACAAGGCATAATGGTGCGCGAGACATCCGAAACATTTGG 857
Query 777 AATAATCACAAGAGAAGACAAATTTCGAGTTGTACCCAAGAAGCTCTCTGTCTTCATCAT 836
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 858 AATAATCACACGAGATGACAAATTTCGAGTTGTACCGAAGAAGCTCTCTGTCTTCATCAT 917
Query 837 CCAACTCGACTGCTGGAAGATTACATTACATGGGGACAAGTTTATTTCAAGGGACAATAT 896
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 918 CCAACTCGACTGCTGGAAGATTACTTTACATGGGGACAAGTTTATTTCAAGAGACAATAT 977
Query 897 TGTTCAACGTTGATGCTAAAA-TGAAGCTCTTGTC 930
||||||||||| ||||||||| ||||||||| |||
Sbjct 978 TGTTCAACGTTAATGCTAAAAATGAAGCTCTAGTC 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5