BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935227
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43290.1 | Symbols: MSS3 | Calcium-binding EF-hand family pr... 1306 0.0
> AT2G43290.1 | Symbols: MSS3 | Calcium-binding EF-hand family
protein | chr2:17991052-17992047 REVERSE LENGTH=996
Length=996
Score = 1306 bits (707), Expect = 0.0
Identities = 760/786 (97%), Gaps = 2/786 (0%)
Strand=Plus/Plus
Query 14 AACAGTTATGGTGAGAATATTCCTTCTCTACAACATACTAAACTCGTTTCTTCTCTCTTT 73
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 86 AACAGTTATGGTGAGAATATTCCTTCTCTACAATATACTAAATTCGTTTCTTCTCTCTTT 145
Query 74 AGTACCAAAGAAGCTACAAACTCTCTTCCCTCTCTCTTGGTTCGACAAAACTCTCCACAA 133
||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 146 AGTACCAAAGAAGCTACGAACTCTTTTCCCTCTTTCTTGGTTCGACAAAACTCTCCACAA 205
Query 134 GAACTCACCACCGTCTCCGTCTACGATGTTACCTTCTCCGTCATCGTCTTCTGCGCCGAC 193
||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 206 GAACTCACCACCGTCTCCGTCAACGATGTTACCTTCTCCATCATCTTCTTCAGCGCCGAC 265
Query 194 CAAAAGAATAGATCCGTCCGAGCTCAAACGCGTTTTCCAGATGTTCGACAAGAACGGTGA 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GAAAAGAATAGATCCGTCCGAGCTCAAACGCGTTTTCCAGATGTTCGACAAGAACGGTGA 325
Query 254 CGGTCGAATCACAAAGGAAGAGCTCAACGACTCACTAGAGAATCTAGGAATCTACATACC 313
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 326 CGGTCGAATCACAAAGGAAGAGCTCAACGACTCGCTTGAGAATCTTGGAATCTACATACC 385
Query 314 AGACAAAGATCTGACTCAAATGATCCATAAGATCGACGCAAACGGTGATGGATGCGTCGA 373
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 386 AGACAAAGATCTGACTCAAATGATCCACAAGATCGATGCTAACGGTGATGGATGCGTCGA 445
Query 374 CATAGACGAGTTTGAGTCGCTGTACAGCTCGATTGTGGATGAGCATCACAACGATGGCGA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CATAGACGAGTTTGAGTCGCTGTACAGCTCGATTGTGGATGAGCATCACAACGATGGCGA 505
Query 434 AACAGAGGAAGAAGATATGAAAGACGCGTTTAACGTGTTTGACCAAGATGGAGATGGGTT 493
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 506 AACAGAGGAAGAGGATATGAAAGATGCGTTTAACGTGTTTGACCAAGACGGAGATGGGTT 565
Query 494 TATCACTGTGGAGGAGTTGAAATCTGTGATGGCTTCCTTGGGACTCAAGCAAGGGAAAAC 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 566 TATCACTGTGGAGGAGTTGAAATCTGTGATGGCTTCCTTGGGACTCAAGCAAGGGAAGAC 625
Query 554 CCTAGATGGTTGCAAGAAGATGATTATGCAAGTTGATGCAGATGGTGATGGTAGAGTCAA 613
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CCTAGATGGTTGTAAGAAGATGATTATGCAAGTTGATGCAGATGGTGATGGTAGAGTCAA 685
Query 614 TTACAAAGAGTTTCTTCAGATGATGAAAGGTGGTGGCTTTAGCAGCAGTAATTGATCTTT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTACAAAGAGTTTCTTCAGATGATGAAAGGTGGTGGCTTTAGCAGCAGTAATTGATCTTT 745
Query 674 AACTAGGGTTTGATTTGACAGAAGAGAAGTGTGTTTATTCGATTGATTGGTTTGTTTTTC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 AACTAGGGTTTGATTTGACAGAAGAGAAGTGTGTTTATTCGATTGATTGGTTTGTTTTTC 805
Query 734 TTGTTTTTTCCTCTGTAAATAA-TTATCTGATGACGAATCAAAACATCGTGTAATCGAAG 792
|||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct 806 TTGTTTTT-CCTCTGTAAATAAATTTTCTGATGACAAATCAAAACATCGTGTAATCGAGG 864
Query 793 AAGGTG 798
||||||
Sbjct 865 AAGGTG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5