BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935233
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily pro... 1847 0.0
> AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily protein
| chr2:18010751-18013238 REVERSE LENGTH=1413
Length=1413
Score = 1847 bits (1000), Expect = 0.0
Identities = 1120/1178 (95%), Gaps = 8/1178 (1%)
Strand=Plus/Plus
Query 5 TCTGATTTTGCAGATCAAATGATGCTTGTTCGGTCGGTGTTTCGATCTCAGATGAGACCC 64
||||| || ||||||||||||||||||||||| || || |||||||||||| || |||||
Sbjct 93 TCTGA-TTAGCAGATCAAATGATGCTTGTTCGATCTGTATTTCGATCTCAGTTGCGACCC 151
Query 65 TCTGTCTCTGGTGGTCTGCAATTTGCTTCTTGCTATTCTTC---ATCTGCTGCTTCAGCT 121
|||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 152 TCTGTCTCGGGTGGTCTGCAATCTGCTTCTTGCTATTCTTCATTATCTGCTGCTTCAGCT 211
Query 122 GAAGCTGAAAGGACTATCAGAGAAGGTCCCAGAAATGATTGGAGTAAAGATGAAATCAAG 181
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 212 GAAGCTGAGAGGACTATCAGAGAAGGTCCCAGAAACGATTGGAGTAGAGATGAAATCAAG 271
Query 182 TCTGTTTATGATTCTCCTGTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACAT 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TCTGTTTATGATTCTCCTCTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACAT 331
Query 242 GTTCATAACTTCAGGGAGGTACAACAATGTACTCTCCTCTCTATAAAGACTGGTGGCTGC 301
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 332 GTTCATAACTTCAGGGAGGTACAACAATGTACCCTCCTCTCCATAAAGACTGGTGGCTGT 391
Query 302 AGTGAAGACTGTTCATATTGTCCTCAATCCTCGAGATATAGCACTGGAGTTAAGGCCCAA 361
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 392 AGTGAAGACTGTTCATATTGTCCTCAGTCTTCGAGATATAGCACTGGAGTTAAGGCACAA 451
Query 362 AGACTCATGTCCAAGGACGCTGTCATTGATGCTGCAAAGAAGGCAAAAGAAGCTGGGAGC 421
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 452 AGACTCATGTCTAAGGACGCTGTCATTGATGCTGCTAAGAAGGCAAAAGAAGCTGGGAGC 511
Query 422 ACACGTTTTTGCATGGGTGCTGCATGGCGAGATACAATTGGACGGAAAACCAACTTCAAC 481
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 512 ACACGTTTTTGCATGGGTGCTGCTTGGCGAGATACAATTGGACGGAAAACCAACTTCAGC 571
Query 482 CAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTG 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTA 631
Query 542 GGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAAGCTGGACTCACTGCCTATAAC 601
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 632 GGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAGGCTGGCCTCACTGCTTATAAC 691
Query 602 CACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGAC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGAC 751
Query 662 GACCGCCTTGAAACTCTTGAGC-ATGTTCGTGAAGCTGGAATCAACGTTTGTTCAGGAGG 720
|| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 752 GATCGCCTTGAAACTCTT-AGCCATGTTCGTGATGCTGGAATCAACGTTTGTTCAGGAGG 810
Query 721 AATCATAGGGCTTGGAGAGGCAGAGGAAGACAGAGTAGGTCTATTACACACACTAGCAAC 780
||||||||||||||| |||||||||||||||||| ||||| |||||||||| || |||||
Sbjct 811 AATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGTTTATTACACACGCTGGCAAC 870
Query 781 ACCTCCTA-TGCACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTC 839
|| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 ACTTCCTTCT-CACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTC 929
Query 840 CTCTCGAAGACCAGAAGCCGGTTGAGATATGGGAGATGATCAGGATGATCGGAACCGCAC 899
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 930 CTCTTGAAGACCAGAAGCCAGTTGAGATATGGGAGATGATCAGGATGATTGGAACCGCAC 989
Query 900 GTATTGTAATGCCAAAAGCAATGGTGAGATTGTCTGCTGGTAGAGTCCGGTTCTCAATGG 959
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 990 GTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTAGAGTCCGGTTCTCAATGT 1049
Query 960 CCGAGCAAGCCCTTTGTTTCCTTGCTGGTGCAAACTCTATCTTCACAGGAGAGAAGCTTT 1019
|||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1050 CCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCTTCACCGGAGAGAAGCTTT 1109
Query 1020 TAACCACACCAAACAATGATTTTGATGCCGACCAGCTCATGTTCAAGACATTAGGCCTCG 1079
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1110 TAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGTTCAAGACATTAGGCCTCA 1169
Query 1080 TTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAAGCAGAAAACTGCGACAAAGTTG 1139
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1170 TTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAGAAAACTGCGAGAAAGTTG 1229
Query 1140 CTTCCGCTTCTCACTAATATCATTATCCACtttttttt 1177
||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CTTCCGCTTCTCACTAATATCATTATCCACTTTTTTTT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5