BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935239
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43390.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 592 1e-168
> AT2G43390.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:18020350-18020861 REVERSE LENGTH=512
Length=512
Score = 592 bits (320), Expect = 1e-168
Identities = 362/383 (95%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 5 TACATTGCTTTATATTTATGATGCCGGAACAAACGTACATGTACGCCTATGTATCGCTGC 64
||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TACGTTGCTTTATATTCATGATGCCGGAACAAACGTACATGTACGCCTATGTAACGCTGC 60
Query 65 CACACCATGACCAGCGAGAACGCTACTCTCAGAAATGTTATCGGGACGGAAGACGGGTGG 124
| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 61 CGCACCATGACCAGAGAGAACGCTACACTCAGAAATGTTATCGGGACGGAAGACGGATTG 120
Query 125 TGTTGGCAAGCTACGACTTGATGGGATCAGAGAGATTCAGTTTCAAAGAGAAGCTTAGGA 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TGTTGGCAAGCTACGACTTGATGGGATCAGAGAGATTCAGTTTCAAAGAGAAGCTTCGGA 180
Query 185 AGTCGATGAAAGGAATAAACGAGTCGGCCGAGCGATGGGTTTCTGAAGTGCGTCAAGGTA 244
|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 181 AGTCAATGAAAGGAATGAACGAGTCGGCCGAACGATGGGTTTCGGAAGTGCGTCAAGGTA 240
Query 245 CAACCAAGAGACGTTTTGCGATTAGAGTTTTAAGGACAAAACTTGGCTTCTATTCTTGCT 304
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 CGACCAAGAGACGATTTGCGATTAGAGTCTTAAGGACAAAACTTGGCTTCTATTCTTGCT 300
Query 305 TCATTCGTAGTGTTGGTTGTTTTACTCCTTGTGTGGGGCACAGAGATAATTTCATGAAGT 364
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 301 TCATTCGTAGTGTTGGATGTTTTACTTCTTGTGTGGGGCACAAAGATAATTTCATGAAGT 360
Query 365 AATTAATCTAAGCGTAAAGTATT 387
||||||||||| | |||||||||
Sbjct 361 AATTAATCTAAACCTAAAGTATT 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18247192887
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5