BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935246

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43460.1 | Symbols:  | Ribosomal L38e protein family | chr2:...   412    6e-115


> AT2G43460.1 | Symbols:  | Ribosomal L38e protein family | chr2:18046004-18047401 
REVERSE LENGTH=600
Length=600

 Score =  412 bits (223),  Expect = 6e-115
 Identities = 243/253 (96%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  1    GTTTCAACCAACAGATCCGACAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCT  60
            |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  88   GTTTCAACCAACAGATTCGAGAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCT  147

Query  61   GACAGCTAGAAGGAAAGATGCACGATCAGTGAAGATCAAGAGAAGCAAGGATATTGTCAA  120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  148  GACAGCTAGAAGGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAA  207

Query  121  GTTTAAGGTCAGATGTTCGAGGTACCTCTACACTCTTTGCGTCTTTGACCAAGAGAAAGC  180
            ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct  208  GTTTAAGGTCAGATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGC  267

Query  181  CGACAAGCTTAAGCAGTCTCTTCCTCCAGGTCTGAGTGTGCAAGACCTTTGAAGATGAAG  240
            ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  268  CGACAAGCTTAAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGAAGATGAAG  327

Query  241  CAAACTTTTTCTG  253
            |||| || |||||
Sbjct  328  CAAAGTTCTTCTG  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5