BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935257

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43535.1 | Symbols:  | Scorpion toxin-like knottin superfami...   326    1e-88


> AT2G43535.1 | Symbols:  | Scorpion toxin-like knottin superfamily 
protein | chr2:18070973-18071676 FORWARD LENGTH=567
Length=567

 Score =  326 bits (176),  Expect = 1e-88
 Identities = 299/354 (84%), Gaps = 26/354 (7%)
 Strand=Plus/Plus

Query  4    agagagagagaAACGTCATGGCAACGAAGTCAG---TTTCCACCTTCGCCATCTTTATCA  60
            ||||| |||||| || |||||||| || |||||   |||| | |||||||||||||||||
Sbjct  141  AGAGATAGAGAATCGCCATGGCAAAGATGTCAGCACTTTCTATCTTCGCCATCTTTATCA  200

Query  61   TCCTCGTTCTGGTTATCTTTGGAATATCTAAAATAGAAGCACAGGATAGCGAGTGCCTGA  120
            ||||||||||||||||||||| |||| || | ||||||||||| ||||||||||| ||||
Sbjct  201  TCCTCGTTCTGGTTATCTTTGAAATACCTGAGATAGAAGCACATGATAGCGAGTGTCTGA  260

Query  121  AAGAATATGGTGTTGATGATGATGGTGATGATGTTGGTTTTCGCTTCTGTGCGCCTAGGA  180
            |||||||||| |  |  | |||   || |  ||  || ||| ||||||||||||||| ||
Sbjct  261  AAGAATATGG-G--G--G-TGA---TG-T--TG--GG-TTTGGCTTCTGTGCGCCTAAGA  305

Query  181  TACATCCGACGCTTTGTTATAGAAGA-TGCGAAGAGGACAAGGGGGCTAAGGGTGGAAAA  239
            ||  ||||||| |||||||||||| | ||| || |||||||||||||||| |||||||||
Sbjct  306  TATTTCCGACGATTTGTTATAGAA-ATTGCCAAAAGGACAAGGGGGCTAATGGTGGAAAA  364

Query  240  TGCCTTTGGGACGAAGAGGGCAGCGGTAATGTGAAATGCTTATGCGACTTCTGCAGCGAG  299
            ||||| ||||  | ||| ||  ||||||| ||||||||||||||||||||||||||| | 
Sbjct  365  TGCCTCTGGG--G-AGA-GG--GCGGTAAAGTGAAATGCTTATGCGACTTCTGCAGCAAT  418

Query  300  GAGCCTTTTAATCAGTTTATAAGTCTTACTTGAATCTTGCATGTGTCGTGGTTT  353
            ||  |||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  419  GAATCTTTTAATCAGTTTATAAGTCTTACTTGAAACTTGCATGTGTCGTCGTTT  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16538089421


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5