BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935265 Length=260 Score E Sequences producing significant alignments: (Bits) Value AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent trans... 198 2e-50 > AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:21286760-21288904 FORWARD LENGTH=1210 Length=1210 Score = 198 bits (107), Expect = 2e-50 Identities = 135/148 (91%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 31 TCTC-CC-AAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGTGTACGATGAATTT-T 87 |||| || |||||||||||||||||||||||||||||||||||| ||| ||||| || | Sbjct 327 TCTCGCCGAAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGAGTATGATGA-TTCGT 385 Query 88 GCGTCTTTGTTTGCTGTTGGAGCACCTGAGGCTTTAGTTATTGGTGTTGTCGCTTTGTTA 147 |||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 386 GCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTA 445 Query 148 GTCTTTGGTCCTAAAGGCCTTGATGAGG 175 ||||||||||||||||| |||| ||||| Sbjct 446 GTCTTTGGTCCTAAAGGTCTTGCTGAGG 473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11863188764 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5