BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935267
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081... 387 1e-106
AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521... 246 2e-64
> AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081331-18082767
REVERSE LENGTH=1074
Length=1074
Score = 387 bits (209), Expect = 1e-106
Identities = 344/407 (85%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 316 GCTAGCATGTTTGCTCATTTCACCCACGAGACCGAACGTTTCTGCAACATAGAGGAGGTA 375
|||| |||||||||||||||||| |||||||||| || ||||||| ||||||| ||| |
Sbjct 373 GCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAAGAGATT 432
Query 376 AACGGGA-CGTCGA-GTGACTATTGCGACGAG-AACAACAGC-CTATACCCATGTGCACC 431
||| ||| | | | || |||| ||| | ||| | ||||| | | |||||||||||||||
Sbjct 433 AAC-GGAGCAAC-ACGTAACTACTGCCA-GAGCAGCAACA-CACAATACCCATGTGCACC 488
Query 432 GGGCAAGA-GCTACTAT-GGTCGTGGCCCGATCCAATTATCATGGAACTACAACTACGGC 489
||| || | |||||| | |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 489 GGG-AAAAGGCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAACTACGG- 545
Query 490 A-CTTGTGGTCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCGGAACTAGTTAGTAGCAA 548
| | |||||||| ||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 546 AGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAA 605
Query 549 CTCAACTGTGGCTTTCCA-GACGGGGTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTAC 607
| ||||||| ||||| || |||||| |||||||||||||||||||||||||||||||| |
Sbjct 606 CCCAACTGTAGCTTT-CAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTC 664
Query 608 TGAACAAAGGATTTGGAGCCACCATTAGAGCCATCAATGCTATGGAGTGTAATGGTGGGA 667
||||| |||| |||||||||||||||||||| || |||| ||||| ||||| ||||| |
Sbjct 665 TGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTA 724
Query 668 ATTTGGGTGCGGTCAATGCAAGGGTTAGG-TACTACACAGACTATTG 713
||| ||||| ||||| |||||| || || ||||| | |||||||||
Sbjct 725 ATTCCGGTGCAGTCAACGCAAGGATT-GGATACTATAGAGACTATTG 770
> AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521029-17522624
FORWARD LENGTH=1024
Length=1024
Score = 246 bits (133), Expect = 2e-64
Identities = 194/224 (87%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 498 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCGGAACTAGTTAGTAGCAACTCAACTGT 557
||||||||||||||||||||||||||||||||| || || || |||||||| |||||||
Sbjct 402 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGT 461
Query 558 GGCTTTCCAG-ACGGGGTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTACTGAACAAAG 616
|||||| || | ||| |||| ||||||||| ||||||||||||||||| |||||| |||
Sbjct 462 AGCTTTC-AGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAG 520
Query 617 GATTTGGAGCCACCATTAGAGCCATCAATGCTATGGAGTGTAATGGTGGGAATTTGGGTG 676
||||||||||||| || ||||||||||||| ||||| ||||| |||||||||| ||||
Sbjct 521 GATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTG 580
Query 677 CGGTCAATGCAAGGGTTAGGTACTACACAGACTATTGCACACAG 720
||||||| |||||| || ||||||| | ||||||||| | ||||
Sbjct 581 CGGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAG 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5