BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935276
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Ut... 3103 0.0
AT3G28230.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 436 3e-121
> AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Utp)
family protein | chr2:18099238-18103345 FORWARD LENGTH=2355
Length=2355
Score = 3103 bits (1680), Expect = 0.0
Identities = 1913/2023 (95%), Gaps = 26/2023 (1%)
Strand=Plus/Plus
Query 1 ACCTGCTCTGCAACACAACAATGGGGAAAAAAGGAGGGACTTTGAAGAGAAGTAGCAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ACCTGCTCTGCAACACAACAATGGGGAAAAAAGGAGGGACTTTGAAGAGAAGTAGCAAAA 232
Query 61 GCACAAAAAAC-CGCAAAGATATCGTCGAAGACCAATACGATGACGAGATTGACGCCTTT 119
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 233 GCAC-AAAAACTCGCAAAGATATCGTCGAAGACCAATACGACGACGAGATTGACGCCTTT 291
Query 120 CATAAACAGAGGGATATAGTTCCCTTGGATGTTAATGATGATACTGATGAATCGGATGAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CATAAACAGAGGGATATAGTTCCCTTGGATGTTAATGATGATACTGATGAATCGGATGAA 351
Query 180 GATGATGTGCAACCTGTTTTTGATTTAAAGGGTGTGGATGATGAAAGTGAGGAGGATGAA 239
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 352 GATGATGTGCAACCTGTATTTGATTTACAGGGTGTGGATGATGAAAGTGAGGAGGAT--- 408
Query 240 GAAGATACAGAAGACGAAGAGGAGTCCGAGAATGGACTTACTGCCAAAATGATTAGGCAG 299
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 409 GAAGATACAGAAGACGAAGAGGAGGCCGAGAATGGACTTACTGCGAAAATGATTAGGCAG 468
Query 300 AAGAAATATCTAAGGGCAAAGTTTGGTGATGGTGACGATGAAATGGCTGATGATGATAAG 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AAGAAATATCTGAGGGCAAAGTTTGGTGATGGTGACGATGAAATGGCTGATGATGATAAG 528
Query 360 GATAAAGATGAGGAAGAGAAAAGGAGCACATGGGGCGGAAGAAGTGGCTTATACCATAGT 419
||| || | |||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 529 GAT-AA-A-GAGGAAGACAAAAGGAGCACATGGGGCGGAAGAAGTGGCCTATACCATAGT 585
Query 420 GGTGATAATGTGGATTTTGATCTCCAATCAAGTGATGATGAAGACCTTAAAGCGGAAGAA 479
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 586 GGTGATAATGTGGATTTTGATATCCTATCAAGTGATGATGAAGACATTAAAGCGGAAGAA 645
Query 480 GAGGAGGTGATAAGACTACGGAG-AGAACAACTTGGATCCATTACAGCAGCTGATGCTGG 538
|| ||||| ||| |||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 646 GAAGAGGTCATACGACTACGG-GCAGAACAACTTGGATCCATAACAGCAGCTGATGCTGG 704
Query 539 GTTAGACGATGATAGTGAAGAAGAGAGTGACAGAGAATTAACCATGGAGGAAATTTCTGA 598
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 705 GTTAGACGATGATAGTGAAGAAGATAGCGACAGAGAATTAACCATGGAGGAAATTTCTGA 764
Query 599 CAAAGGAAAGCAGGCTACAAAATCTATCACAGATAAGAAAGAGAAGGATGACAAGGACAC 658
|||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||
Sbjct 765 CAAAGGTAAGCAGGCTACAAAATCCATCACAGATAAGAAAGAGAAGGGTGATAAGGATAC 824
Query 659 ACATGTTGAAGAGATCAAGAAAGACATCAACTCTTTGTCAAAAGAAGAGCAAATGGATGT 718
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 825 ACATGTTGAAGAGATCAAGAAAGACATAAACTCTTTGTCAAAAGAAGAGCAAATGGATGT 884
Query 719 AGTATATAGTTCTGCTCCGGAAATAGTTGGTCTTTTGTCTGAGTTGAACTATGCAGTCGA 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 885 AGTATATAGTTCTGCTCCGGAAATAGTTGGTCTTTTGTCTGAGTTGAACGATGCAGTTGA 944
Query 779 AGAGCTTGAGAGTAAGATAAATCCTGTTTTGAGTAAGTTAAAGGAAGGAGAACTTTCGTT 838
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 945 AGAGCTTGAGAGTAAGATAAATCCTGTTATGAATAAGTTAAAGGAAGGAGAAATTTCGTT 1004
Query 839 GAATGGTGGAACAAGGTACCTGGAGGTTAAGCAGCTTCTGCTACTCACCTATTGCCAATC 898
||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1005 GAATGGTTTAGCAAGGTACCTGGAGGTTAAGCAGCTTCTGCTACTTACCTATTGCCAATC 1064
Query 899 TATAACATTTTATCTTCTACTCAAGTCTGAAGGGCAGCCCATCCGTGATCATCCGGTCCT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TATAACATTTTATCTTCTACTCAAGTCTGAAGGGCAGCCCATCCGTGATCATCCGGTCCT 1124
Query 959 TGCCCGTCTTGTAGACATCAAATCTTTACTAGATAAGATCAAAGAACTTGATGGAGAGCT 1018
|||||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1125 TGCCCGTCTTGTCGAGATCAAATCTTTATTAGATAAGATCAAAGAACTTGATGAAGAGCT 1184
Query 1019 TCCCCCTGGGTTTGAAGAGTCCCTAGCGAGAAGTATTGCTAATGGAACAGTGCAAAAGGT 1078
||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1185 TCCCCCTGGATTTGAAGAGTCCCTAGCAAGAAGTATTGCTAATGGAGCAGTGCAAAAGGT 1244
Query 1079 GGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGATAGAATCACGCAAGA 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1245 GGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGATAGAATCACACAAGA 1304
Query 1139 CACAGCCGAGCCAATGAAAATTGATGGA-GCaagagaagaaaagaagaaaaaaggagaga 1197
||||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1305 CACAGCCAAGCCGATGAAAATTGA-CAACGCAAGAGAAGAAAAGAAGAAAAAAGGAGAGA 1363
Query 1198 aaCGCAAGCACCAGCAGAATGATCAGGTTGATGTGCAAAGTGAGGAAATGTTAAAACTTC 1257
|||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1364 AACGCAAGCA-C--CAGAATGATCTGGTTGATGTGCAAAGTGAGGAGATGTTAAAACTTC 1420
Query 1258 GAGCAGCTCTAGAGGGAAAGCTTAGAAGCAATGGAGTCCTTGGTTCTACTGTTTCAAAGT 1317
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1421 GAGCAGCTCTAGAGGGAAAACTTAGAACCAATGGAGTCCTTGGTTCTACTGTTTCAAAGT 1480
Query 1318 CTGATAAAGCTCAGAAACGCCAGAAATTAGCTAATAGGAAGCTAGAGACATTCGATGATT 1377
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTGATAAAGCTCAAAAACGCCAGAAATTAGCTAATAGGAAGCTAGAGACATTCGATGATT 1540
Query 1378 ATGTGGATGATGCAGACAATAGCACACATAATGTAACAGCTGATAAGCTCACCAAGCTTG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 ATGTGGATGATGCAGACAATAGCACACATAATGTAACAGCTGATAAGCTCACCAAGCTTG 1600
Query 1438 TGTCCACCAAACGGAAGCCCAAGACTGTTTCTGGAGATGATGATTTACCACAAAGGGATG 1497
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 1601 TGTCCACCAAACGGAAGCCCAAGACTATTTCTGGAGATGATGATTTACCGCAAAGAGATG 1660
Query 1498 ATATTGGAGAACGGCGTAGAAAGTTTGAGCTCAGAGTTTTGGCTGGAGCTGGTGTGAAGT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 ATATTGGAGAACGGCGTAGAAAGTTTGAGCTCAGAGTTTTGGCTGGAGCTGGTGTGAAGT 1720
Query 1558 CATCAGAGGGAGATGGCAGGAATGAAAATGGGGCATTTGCATCAGATGATGACAATGATA 1617
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1721 CATCAGAGGGAGATGGCAGGAATAAAAATGGGGCATTTGCATCAGATGATGAGGATGATA 1780
Query 1618 TCGATGGTGGTAACAATGACATGGTTGATAATGATGGTGAATCAGAAGGCTCAGAAGATG 1677
|||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1781 ACGATGGTGATAACAATGACATGGTTGATAATGATGGTGAATCAGAAG----A-----TG 1831
Query 1678 AATTTTACAAACAAGTGAAACAGAAACAAGAAGCTAAACGAGCTGCTAAAGCAGAGATCT 1737
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1832 AATTTTACAAACAAGTGAAACAGAAACAACAAGCTAAACGAGCTGCCAAAGCAGAGATCT 1891
Query 1738 ATTCAAGGAAACCACATTTGATCCCGTCATCGCCAGAACGCGTGGATGGAAAACGACATA 1797
||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 1892 ATTCAAGAAAACCTCATTTGATGCCGTCATCGCCAGAACACGTGGATGGAAAACGACACA 1951
Query 1798 TTTCAAATCAGATTATGAGTAACAGAGGATTGACCCGACATCGCAACAAGGACCTTAAAA 1857
||||||||||||| |||||||||||||||||||||| || ||||||| |||||| ||||
Sbjct 1952 TTTCAAATCAGATGGTGAGTAACAGAGGATTGACCCGGCAACGCAACAGGGACCTCAAAA 2011
Query 1858 ACCCGAGAAAGAAGTATCGGAATAAGCACGAGAAAAAAGTCATT-GATCGCAAAGGACAG 1916
|||||||||||||||| ||||| || ||||||||||||||| | || ||||||||||||
Sbjct 2012 ACCCGAGAAAGAAGTACCGGAAAAATTACGAGAAAAAAGTCACTAGA-CGCAAAGGACAG 2070
Query 1917 GTCAGAGATATCCGGAAACAAACAGGTCCATATTCAGGAGAAACTCGCGGTATCAATCCC 1976
|||||||||||| |||||||||| ||||||||| |||||||| | || ||||||||||||
Sbjct 2071 GTCAGAGATATCAGGAAACAAACGGGTCCATATGCAGGAGAAGCCCGAGGTATCAATCCC 2130
Query 1977 AACACAAGCAGGAGCATCCGAATCAAGAACTAACCTCCTCTTC 2019
||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2131 AACACAAGCCGGAGCATCCGAATGTAGAACTAACCTCCTCTTC 2173
> AT3G28230.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED
IN: 15 plant structures; EXPRESSED DURING: 6 growth stages;
CONTAINS InterPro DOMAIN/s: Something about silencing
protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis
thaliana protein match is: Sas10/U3 ribonucleoprotein
(Utp) family protein (TAIR:AT2G43650.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10529215-10530199
FORWARD LENGTH=624
Length=624
Score = 436 bits (236), Expect = 3e-121
Identities = 318/357 (89%), Gaps = 8/357 (2%)
Strand=Plus/Plus
Query 1657 AATCAGAAGGCTCAGAAGATGAATTTTACAAACAAGTGAAACAGAAACAAGAAGCTAAAC 1716
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 272 AATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGAAGCTAAAA 331
Query 1717 GAGCTGCTAAAGCAGAGATCTATTCAAGGAAACCACATTTGATCCCGTCATCGCCAGAAC 1776
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 332 AAGCTGCCAAAGCAGAAATCTATTCAAGGAAACCATATTTGATCCCGTCATCGCCAGATC 391
Query 1777 -GCGTGGATGGAAAACGACAT-ATTTCAAATCAGATTA-TGAGTAACAGAGGATTGACCC 1833
| |||||||||| |||| | |||||||||||||| | |||||||||||||||||||
Sbjct 392 TG-GTGGATGGAAGACGAT-TGATTTCAAATCAGATGGCT-AGTAACAGAGGATTGACCC 448
Query 1834 G-ACATCGCAACAAGGACCTTAAAAACCCGAGAAAGAAGTATCGGAATAAGCACGAGAAA 1892
| | | ||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||
Sbjct 449 GGAAA-CGCAACAAGGACCATAAAAACCCGAGAAAGAAGTACCGGGATCAGCACAAGAAA 507
Query 1893 AAAGTCATTGATCGCAAAGGACAGGTCAGAGATATCCGGAAACAAACAGGTCCATATTCA 1952
| ||||||| | |||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct 508 ATAGTCATTAACCGCAAAGGACAGGTCAGAGATATCAGGACGCAAGTGGGTCCATATGCA 567
Query 1953 GGAGAAACTCGCGGTATCAATCCCAACACAAGCAGGAGCATCCGAATCAAGAACTAA 2009
|||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 568 GGAGAAACTCGCGGTATCAATCCCTACACAAGCCGCAGCATCCGAATCAAGAACTAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100752493815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5