BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935279
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43680.1 | Symbols: IQD14 | IQ-domain 14 | chr2:18108349-181... 2115 0.0
> AT2G43680.1 | Symbols: IQD14 | IQ-domain 14 | chr2:18108349-18111831
FORWARD LENGTH=2505
Length=2505
Score = 2115 bits (1145), Expect = 0.0
Identities = 1330/1417 (94%), Gaps = 22/1417 (2%)
Strand=Plus/Plus
Query 678 TCTCCAAGAGCTG-CTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 736
||| ||| ||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 TCTTCAA-AGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943
Query 737 TTCCCCAAAAACTGCCTCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCCAC 796
|| |||| | |||| |||| ||| ||||||||||||||||| |||||| || |||||||
Sbjct 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003
Query 797 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTAC 856
|||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| ||
Sbjct 1004 CACGCCTAGGCCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCAC 1063
Query 857 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCAC 916
||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1064 TACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCCAC 1123
Query 917 TACGCCTAAGCCCCCTTCTCCAAGAGCGGTTTCGCCTAGGGGTGTGCAGCGACGAGAGGT 976
||||||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||| |
Sbjct 1124 TACGCCTAAGCCCCCTTCTCCAAGATCGGTTTCTCCTAGGGCTGTGCAGCGGCGGGAGAT 1183
Query 977 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1243
Query 1037 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1303
Query 1097 TCAAGGTGTGGTGAGAGGATACAGTGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1156
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1304 TCAAGGTGTGGTGAGAGGATACAGCGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1363
Query 1157 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1423
Query 1217 CCAAGCTCAGGTGGAGAAAGATGAAGCCAAATGGGGTGCATCTGAAGCTGGTAACGATAA 1276
|||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 1424 CCAAGCCCAGGTAGAGAAAGATGAAGCCAAATGGGCTGCGTCTGAAGCTGGTAATGATAA 1483
Query 1277 TTGGGATGACAGTGTGCTGACAAAAGAAGAAAGGGATGCAAGATCACAGAGAAAGACTGA 1336
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1484 TTGGGATGACAGTGTGCTGACAAAAGAGGAAAGGGATTCAAGATCACAAAGAAAGACTGA 1543
Query 1337 CGCGATCATCAAGAGAGAAAGATCCATGGCTTATGCATATTCTCGCAAGCTGTGGAAGAA 1396
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1544 CGCAATCATCAAGAGAGAAAGATCCATGGCCTATGCATATTCTCGCAAGTTGTGGAAGAA 1603
Query 1397 CAGTCCCAAGTCTACTCAGGACAATCGTTCTTCAGGTGGGTTCCCTCAATGGTGGAACTG 1456
|||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1604 CAGTCCTAAGTCTACTCAGGACAATCGTTCTT----T-----CCCTCAATGGTGGAACTG 1654
Query 1457 GGCGGACCGGCAGCATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAGAGAGA 1516
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1655 GGTGGACCGGCAGAATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAAAGAGA 1714
Query 1517 CTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCGCTGTCTCAGTCAAGCAAACAACA 1576
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1715 TTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCTCTGTCTCAGTCAAGCAAACAACA 1774
Query 1577 CCATATCAGGCTTGACAACCACTTTGACACTTCCACACCCAGATCGTCGAGATCTACTTT 1636
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1775 CCATATCAGGCTTGACAACCACTTTGACACTTCAACACCCAGATCGTCAAGATCCACTTT 1834
Query 1637 TCACACTCCATCCAGACCCATCCACACAGGGACATCAAGATACTCGAGAGGAAGACTAAG 1696
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1835 TCACACTCCCTCCAGACCCATCCACACAGGGACATCAAGATACTCAAGAGGAAGACTAAG 1894
Query 1697 AGGTCAAGATTCTCCTTTCAAGGATGATGACAGCCTCACAAGCTGCCCTCCATTCCCGAG 1756
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1895 AGGTCAAGATTCTCCTTTCAAGGATGATGATAGCCTCACAAGCTGCCCTCCATTCCCTAG 1954
Query 1757 CTACATGGCTCCAACAGTCTCTGC-AAAGGCAAAAGTTAGACCAAACAGCAATCCAAAGG 1815
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1955 CTACATGGCTCCAACAGTCTCTGCCAAAG-CAAAAGTTAGACCAAACAGCAATCCAAAGG 2013
Query 1816 AGAGAGTGATGGGTACACCGGTAAGCGAGAAGAGGAGAATGTCGTTTCCTCCCATGCAAC 1875
||||||||||||||||||| || |||||||||||||||||||||| ||| |||| ||||
Sbjct 2014 AGAGAGTGATGGGTACACCAGTCAGCGAGAAGAGGAGAATGTCGTATCCCCCCACGCAA- 2072
Query 1876 AAGGTCTTGATACGTTTAGATGGAACAAAGGGTCATTGCTCATGAGCAACAGCAGCAGCC 1935
| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2073 --G------ATACGTTTAGATGGAACAAAGGGTCATTGGTCATGAGCAACAGCAGCAGCC 2124
Query 1936 ACAGAGGTCCTGGGTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAGTCAG 1995
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2125 ACAGAGGTCCTGGTTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAATCAG 2184
Query 1996 TAGGAAATTTGAGTATTGGTTCCACTGCCTCGATGGCAACAACAGTTGGGAGAAAGGAAT 2055
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2185 TAGGAAATTTGAGCATTGGTTCCACTGCCTCCATGGCAACAACAGTTGGGAGAAAGGAAT 2244
Query 2056 TTAACAGATTTGTGTGATTTCTTTTGATTTGAACATT 2092
|||||||||||||||||||||||||||||||||||||
Sbjct 2245 TTAACAGATTTGTGTGATTTCTTTTGATTTGAACATT 2281
Score = 1014 bits (549), Expect = 0.0
Identities = 810/927 (87%), Gaps = 53/927 (6%)
Strand=Plus/Plus
Query 1 GTAAGGAAAGTAATGTTGG-AATAATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 59
||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 229 GTAAGGAAAGTGATGTTGGCAA-AATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 287
Query 60 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCAGAGAGAAAGAGT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCAGAGAGAAAGAGT 347
Query 120 GTAAAAGAAAAGAGGAAGAAGGGGTTTGGGAAGCTAAGGCATGGAGAGACCAATTCATTT 179
| |||||||||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 348 GGCAAAGAAAAGAAGAAGAAAGGTTTTGGGAAGCTAAGGCATGGCGAGACCAATTCATTT 407
Query 180 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 467
Query 240 CACAATCTTGTTTTCAGGCCTCCTACTCCTGATCGATCAAATCCATTTTCAGcctctcct 299
||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 468 CACAATCTTGTCTTCAGGCCTCCTACTCCTGATCGACCAAATCCATATTCAGCCTCTCCT 527
Query 300 cct------cct-c--ctccAAGGCCTGCTTCTCCTCGGGTTC--CTTC-CCCA-A---G 343
||| ||| | |||| || |||||| || | | | |||| || | | |
Sbjct 528 CCTCCGAGGCCTGCTTCTCCTCGGGTTGCTTC-CC-CAAGACCAACTTCTCCAAGAGTTG 585
Query 344 ----ACCA--A----CTTCTCCAAGAGTTG-CCTCACCACGAGCCGC-TTCTCCAAAGCC 391
|||| | |||||||||||| || | ||| || || | ||| ||||||||
Sbjct 586 CCTCACCACGAGTCCCTTCTCCAAGAGCTGAAGT-TCCAAGAACC-CTTTCACCAAAGCC 643
Query 392 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCGCCAAAGCCTCCTTCTCCAAGAGC 451
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 644 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCACCAAAGCCTCCTTCTCCAAGAGC 703
Query 452 TGACCTTCCAAGATCACTTTCGCCAAA-------G--C---CGAAGCCATCATCAGCCTC 499
||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 704 TGACCTTCCAAGATCACTTTCGCCAAAGCCCTTTGATCGATCGAAGCCATCATCAGCCTC 763
Query 500 TGCCAATG---CTCCTCCTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 556
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGCTAATGCCCCTCCTACTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 823
Query 557 CCCTCCCAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCATCCCCACAAGCCGT 616
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 824 ACCTCACAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCCTCCCCACAAGCCAT 883
Query 617 CTCTTCAAAGCCGCCTTCTCCAAGAGCTGAGCCACCAACATTGGACACTCCAAGACCTCC 676
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 884 CTCTTCAAAGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943
Query 677 TTCTCCAAGAGCTGCTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCT-C 735
||||||||||||||||||| ||| ||||| ||||||| |||||| || || |||| |
Sbjct 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003
Query 736 CTTCCCCAAAAACTGCCT-CTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCC 794
| | || | || ||| ||||| |||||| |||||||||| ||||||||| |||||
Sbjct 1004 CA-CGCCTAGGCCT-CCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCC 1061
Query 795 ACCACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCT 854
|| ||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1062 ACTACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCC 1121
Query 855 ACCACGCCTAAGCCTCCTTCTCCAAGA 881
|| ||||||||||| ||||||||||||
Sbjct 1122 ACTACGCCTAAGCCCCCTTCTCCAAGA 1148
Score = 217 bits (117), Expect = 4e-55
Identities = 170/195 (87%), Gaps = 5/195 (3%)
Strand=Plus/Plus
Query 750 GCC-TCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACC-CACCACGCCTAAG- 806
||| |||||||| ||||| ||||||| ||| || |||||||||| | || | || |||
Sbjct 896 GCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTC-CCTCTCC-AAGA 953
Query 807 CCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTACCACGCCTAAG 866
|| |||||| |||||||||| ||||||||||||||||| || |||| |||||||||| |
Sbjct 954 GCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCACCACGCCTAGG 1013
Query 867 CCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCACTACGCCTAAG 926
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1014 CCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCACTACGCCTAAG 1073
Query 927 CCCCCTTCTCCAAGA 941
|| ||||||||||||
Sbjct 1074 CCGCCTTCTCCAAGA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103714325970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5