BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935287
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43740.1 | Symbols: | Mannose-binding lectin superfamily pr... 379 2e-104
AT2G43730.1 | Symbols: | Mannose-binding lectin superfamily pr... 187 1e-46
> AT2G43740.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:18126578-18128293 REVERSE LENGTH=1589
Length=1589
Score = 379 bits (205), Expect = 2e-104
Identities = 525/667 (79%), Gaps = 71/667 (11%)
Strand=Plus/Plus
Query 231 AGACTGAATCACGATGAGTATGTGACTGGGTTGAGTGGAATAGA--TTGGGAAGGAGGGG 288
||||| ||| ||||||||| |||||| |||||||||| |||| | || | || ||||
Sbjct 725 AGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAA--AGGGA 782
Query 289 TCACGTCTTTGACAT-TTTACACTAACCAGAGGAAAGACGGACCGATTTGT-A-AGAGAT 345
||||| ||||| || || ||||||| ||| ||||| |||| ||||||||| | ||| ||
Sbjct 783 TCACGAATTTGA-ATATTCACACTAATCAGGGGAAACACGGCCCGATTTGTGATAGATAT 841
Query 346 T--TGAT-----TATCTTA---A-AGACCGTAAGAG-GGAAATTAATGTGGGGATACGTG 393
| | || || ||| | | || |||| | ||||||| ||||| ||||||||
Sbjct 842 TCATCATCAAAGAATATTATGGATA-ACTATAAG-GTGGAAATTGATGTGAAGATACGTG 899
Query 394 ATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTCTCCACTAT-TATCGGCTGTCTGAGT 452
|||||||||||||||||||||||||||||||||| | | || ||| ||| ||||| |
Sbjct 900 ATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTT-TG-A-TAACTAT-GGCACTCTGACT 955
Query 453 TCCATTGGCATTTATGTCTGTCCCATTACAAGCATCAATGACGCAG---TCAGAACCAAG 509
||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||
Sbjct 956 TCCATTGGCATTTATGTGTGTCCCATTACAAGGATCAATGACGTAGCCCTCAGAACCAAC 1015
Query 510 TACAAAGTCACCGAAGTCACAAATGCCGACGACGACCAGCTCACTCTCTACCAATCATCA 569
|||||||||||||| | || | | |||||| | ||| ||| |||| ||||||||
Sbjct 1016 TACAAAGTCACCGATG--ACTA---C-GACGACCAA-AGC--ACTTTCTATCAATCATCT 1066
Query 570 GATTCTATAGCC-CTAATCAACCATAATCG-AACGCTTGAATATCAAATCCCTCATGAGG 627
| | || || || | ||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 1067 GGTCCTTTAACCAC-AATCAACCATAATCGGAA-GCTTGAATATCAAATGCCTCATGAGG 1124
Query 628 CCTCCGATGGTTTTCATGTCAAGCCCATCATTCATAAGCCCAAGTTCAAAGACGAGCTGA 687
|||||||| | || | |||||| ||||||| ||||| ||| ||||| || | |
Sbjct 1125 TCTCCGATG-T---CA----A-GCCCATTGTTCATAACCCCAATTTCGAAGACAAGATCA 1175
Query 688 GTCTCTACCAATCATCTGATCTTCTAGCCAGAAGCACTAACAATCGGACACTTGAGTATC 747
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1176 GTCTCTACCAATCATCGGATCGTCTAGCCAGAAGCACTAACACTCGGACACTTGAGTATC 1235
Query 748 AAAACTTGGAGTTTCTCGATGTTTTTCATCGTGTCAAGCCCATTGGTGGTAAG-CGCAAA 806
| | | |||||| |||||||| || | | || |||||| ||||| | ||||
Sbjct 1236 AGATCCCGGAGTTCCTCGATGT----CAA--T--C---CC-ATTGGTCGTAAGTC-CAAA 1282
Query 807 CTCAAAGA-GAGTATATTGTCCAAGTTGGGGCGCCTTTTAAAGAA-TCTCTTGGATTAGA 864
|||||| | | | ||||| |||||||||| ||| ||||| | ||| ||||||||||||||
Sbjct 1283 CTCAAATATG-GCATATTCTCCAAGTTGGCGCGTCTTTTCA-GAAATCTCTTGGATTAGA 1340
Query 865 T-TTTTT 870
| |||||
Sbjct 1341 TCTTTTT 1347
> AT2G43730.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:18124648-18125868 REVERSE LENGTH=1047
Length=1047
Score = 187 bits (101), Expect = 1e-46
Identities = 329/432 (76%), Gaps = 43/432 (10%)
Strand=Plus/Plus
Query 69 TGGGACGAGAAGGGACACAACATGATCTCTTA-CATATATGTTGAGCACGACGACGACCG 127
||||| |||||||||| ||||||||| || || |||||||||| | || | ||
Sbjct 269 TGGGAAGAGAAGGGACGCAACATGATATC-TAGTATATATGTTGCTTTCAACAAAGA--- 324
Query 128 TAACATAATAACGTCTATTCAATTT-GTCTATTTTCACAA-GAAAGCTCCA-ATCATGTC 184
| ||||| || | |||||| ||| | ||||||||| || | || | || || ||||
Sbjct 325 TTCCATAA-AA--TGTATTCAGTTTAG-CTATTTTCATAACG-GAG-TTCATGTCGTGTC 378
Query 185 TAAAAAGCATGGTTGCTATGTAC-AAGGTGAAAAATTCTTAAT-GATAAGACTGAATCAC 242
| ||||||| |||| | || | ||||| || | | ||| | | ||||||||| ||
Sbjct 379 TGAAAAGCACGGTT-C---GTCCAAAGGTCAATCCTACGAAATCG-TGAGACTGAATGAC 433
Query 243 GATGAGTATGTGACTGGGTTGAGTGGAATAGATTGGGA-AGGAGGGGTCACGTCTTTGAC 301
|||||||||||||||||||||||||||||| |||||| || | || |||||||||||||
Sbjct 434 GATGAGTATGTGACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGG-TCACGTCTTTGAC 492
Query 302 ATTTTACACTAACCAGAGGAAAGACGGACCGATTTGTAA-GAGATTTG-AT-T--ATC-- 354
|||| ||||||| ||| ||||| |||| ||| ||||||| | || || || | |||
Sbjct 493 ATTTCACACTAATCAGGGGAAACACGGGCCGTTTTGTAATG-GAACTGGATATTCATCAA 551
Query 355 -TTAAA-GACCG-T-A-A-GAGGGAAATTAATGTGGGGATACGTGATCGTCGTGAGTTTG 408
||| | | | | | | | || ||||||| ||||| |||||||||||||||||||||||
Sbjct 552 GTTATATGGCAGATTATAAGAAGGAAATTGATGTGAAGATACGTGATCGTCGTGAGTTTG 611
Query 409 GTGGTTTCTTTGGGTCTTTC--TCCACTA-TTATCGGCTGTCTGAGTTCCATTGGCATTT 465
||||||||||||||||||| | || | || | | | |||||| |||||||||||||
Sbjct 612 GTGGTTTCTTTGGGTCTTTTGATG-ACGAATT-T-GACGGTCTGACATCCATTGGCATTT 668
Query 466 ATGTCTGTCCCA 477
|||| | |||||
Sbjct 669 ATGTTTATCCCA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5