BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935291
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | O-acetylser... 2250 0.0
AT3G59760.1 | Symbols: OASC, ATCS-C | O-acetylserine (thiol) ly... 1074 0.0
AT2G43745.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 259 4e-68
> AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | O-acetylserine
(thiol) lyase B | chr2:18129435-18132552 REVERSE LENGTH=1578
Length=1578
Score = 2250 bits (1218), Expect = 0.0
Identities = 1275/1303 (98%), Gaps = 1/1303 (0%)
Strand=Plus/Plus
Query 1 TCTACTTC-GTCTGTGTACAATATTCGGAAAGTGAGGAAGATACACTGAAGCAAAAGAGC 59
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 TCTACTTCTCTCTGTGTACAATATTCGGAAAGTGAGGAAGATACACTGAAGCAAAAGAGC 225
Query 60 AAGTCATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AAGTCATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACC 285
Query 120 GACCTTTCATATACTCGCCAGAGTTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTG 179
| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 286 GTCCTTTCAAATACTCGCCAGAGCTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTG 345
Query 180 CTTTCGATGTTTCCTCGGCTGCTCTCACGCTCAAGAGACAGAGCAGGAGTGATGTTGTGT 239
|||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 346 CTTTCGATGTTTCCTCAGCTGCTTTCACGCTCAAGAGACAGAGCCGGAGTGATGTTGTGT 405
Query 240 GCAAGGCTGTATCTGTCAAGCCAGAAGCTGGTGTTGAAGGGCTTAATATCGCCGATAACG 299
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 406 GCAAGGCTGTATCTATCAAGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACG 465
Query 300 CCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTG 525
Query 360 TTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGA 585
Query 420 TTGGGTATAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTG 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TTGGGTACAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTG 645
Query 480 TTCTTGTGGAATCTACGAGTGGAAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAA 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 646 TTCTTGTGGAATCTACGAGTGGGAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAA 705
Query 540 AAGGCTATAAACTTATCTTGACGATGCCCGCATCCATGAGTTTGGAAAGGCGGGTTCTTT 599
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 706 AAGGCTATAAACTTATCTTGACGATGCCTGCGTCCATGAGTTTGGAAAGGCGGGTTCTTT 765
Query 600 TGAGGGCATTTGGAGCTGAGCTTGTATTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 766 TGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 825
Query 660 TTCAGAAGGCTGAAGAAATCTTGAAGAAAACTCCCAATTCCTATATGCTCCAACAGTTTG 719
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 826 TTCAGAAGGCTGAAGAAATCTTGAAAAAAACTCCCAATTCCTACATGCTCCAACAGTTTG 885
Query 720 ACAACCCTGCCAATCCCAAGATTCATTACGAGACGACTGGTCCTGAGATCTGGGAAGATA 779
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 886 ACAACCCTGCCAATCCCAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATA 945
Query 780 CAAGAGGCAAAATTGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTG 839
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CAAGAGGCAAAATCGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTG 1005
Query 840 TTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTAGAACCCACGG 899
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1006 TTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTCGAACCCACGG 1065
Query 900 AAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGGGCTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1066 AAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTG 1125
Query 960 GATTTGTACCTAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTG 1019
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTG 1185
Query 1020 AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATAT 1245
Query 1080 CTTCTGGAgctgctgctgctgctgcAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGA 1305
Query 1140 AACTCATAGCTGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCC 1199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 AACTCATAGCCGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCC 1365
Query 1200 AGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCTGAGCTTTGAGTTTCTTCTGTAATTT 1259
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1366 AGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCCGAGCTTTGATTTTCTTCTGTAATTT 1425
Query 1260 CGTGACCAACAAGGAACCTTTTCTTCGATTTATTGCTGATTGT 1302
||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1426 CGTGACCAACAAGGAACCTCTTCTTTGATTTATTGCTGATTGT 1468
> AT3G59760.1 | Symbols: OASC, ATCS-C | O-acetylserine (thiol)
lyase isoform C | chr3:22071948-22075416 REVERSE LENGTH=1544
Length=1544
Score = 1074 bits (581), Expect = 0.0
Identities = 826/944 (88%), Gaps = 18/944 (2%)
Strand=Plus/Plus
Query 303 CTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTC-AAGGGCTGTGTT 361
||||||| |||||||||||||| |||||||||||||||| | ||| | || || |||||
Sbjct 424 CTCAGCTCATTGGGAAAACTCCTATGGTGTACTTGAACAGTATAG-CAAAAGGTTGTGTA 482
Query 362 GCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGATT 421
|||| | ||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 483 GCAAATATTGCTGCCAAACTCGAGATCATGGAGCCATGTTGCAGTGTCAAGGATAGGATT 542
Query 422 GGGTATAGTATGATTACTGATGCTGAAG-AGAAAGGACTTATAACACCTGGAAAGAGTGT 480
||||| |||||| |||||||||||| || | |||||| ||||| ||||||||||||||||
Sbjct 543 GGGTACAGTATGGTTACTGATGCTG-AGCAAAAAGGATTTATATCACCTGGAAAGAGTGT 601
Query 481 TCTTGTGGAATCTACGAGTGGAAACACAGGG-ATTGGCCTTGCATTCATTGCTGCTTCAA 539
|||||||||| |||| ||||||||||| ||| |||||||| |||||||| ||||||||||
Sbjct 602 TCTTGTGGAACCTACAAGTGGAAACAC-GGGTATTGGCCTAGCATTCATCGCTGCTTCAA 660
Query 540 AAGGCTATAAACTTATCTTGACGATGCCCGCATCCATGAGTTTGGAAAGGCGGGTTCTTT 599
||||||| |||||||||||| ||||| |||||||||||| ||||||| |||||||||
Sbjct 661 GGGGCTATAGACTTATCTTGACAATGCCAGCATCCATGAGTATGGAAAGAAGGGTTCTTT 720
Query 600 TGAGGGCATTTGGAGCTGAGCTTGTATTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 659
| | ||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 721 TAAAGGCATTTGGAGCTGAGCTTGTATTAACAGATCCTGCTAAAGGCATGACTGGAGCGG 780
Query 660 TTCAGAAGGCTGAAGAAATCTTGAAGAAA-ACTCCCAATTCCTATATGCTCCAACAGTTT 718
|||||||||||||||| |||||||| ||| ||||| || | || |||||||||||||||
Sbjct 781 TTCAGAAGGCTGAAGAGATCTTGAA-AAACACTCCTGATGCATACATGCTCCAACAGTTT 839
Query 719 GACAACCCTGCCAATCCCAAGATTCATTACGAGACGACTGGTCCTGAGATCTGGGAAGAT 778
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 840 GACAACCCTGCAAATCCAAAGATTCATTACGAGACTACTGGTCCTGAGATCTGGGATGAT 899
Query 779 AC-AAGAGGCAAAATTGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGG 837
|| ||| ||||| | ||||| || ||||| || ||||||||||||||||||||||||||
Sbjct 900 ACAAAG-GGCAAGGTGGATATCTTTGTTGCAGGAATTGGAACTGGTGGAACTATCACTGG 958
Query 838 TGTTGGTCGATTCATTAAAGAAAGAAAA-CCTGAATTGAAGGTTATTGGTGTAGAACCCA 896
|||||||||||| |||||||| | |||| || || | |||||||||||||||||||||
Sbjct 959 TGTTGGTCGATTTATTAAAGAGA-AAAATCCCAAAACGCAGGTTATTGGTGTAGAACCCA 1017
Query 897 CGGAAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGGG 956
| ||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1018 CCGAAAGCGATATACTTTCTGGTGGCAAACCGGGACCTCACAAGATTCAAGGAATTGGAG 1077
Query 957 CTGGATTTGTACCTAAGAATTTGGATCTGGCTATTGTAGATGAA-TACATAGCGATTTCC 1015
|||||||| |||||||||||||||||| | ||| | |||||| | ||||||||||||
Sbjct 1078 CTGGATTTATACCTAAGAATTTGGATCAGAAAATTATGGATGAAGT-CATAGCGATTTCA 1136
Query 1016 AGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGT 1075
|||||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct 1137 AGTGAGGAAGCTATAGAAACCGCAAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTTGGT 1196
Query 1076 ATATCTTCTGGAgctgctgctgctgctgcAATCCAGGTTGCAAAGAGACCTGAAAATGCC 1135
||||| ||||||||||| ||||||||||||||| |||| || ||||||||||| |||||
Sbjct 1197 ATATCATCTGGAGCTGCAGCTGCTGCTGCAATCAAGGTGGCTAAGAGACCTGAGAATGCT 1256
Query 1136 GGGAAACTCATAGCTGTTGTGTTCCCGAGCTTCGGGGA-ACGTTACCTCTCGACCCAGCT 1194
|| ||||||||||||||||| ||||||||||||||||| | | || || ||||||| |||
Sbjct 1257 GGAAAACTCATAGCTGTTGTTTTCCCGAGCTTCGGGGAGA-GATATCTATCGACCCCGCT 1315
Query 1195 TTTCCAGTCGATTCGAGAAGAG-TGCGAGCAAATGCAGCCTGAG 1237
|||||||| || || |||||| || ||| ||||||||||||||
Sbjct 1316 GTTCCAGTCTATCCGGGAAGAGGTG-GAGAAAATGCAGCCTGAG 1358
> AT2G43745.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Mannose-binding lectin superfamily protein (TAIR:AT2G43730.1);
Has 10 Blast hits to 10 proteins in 2 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr2:18128529-18129841 REVERSE LENGTH=1227
Length=1227
Score = 259 bits (140), Expect = 4e-68
Identities = 148/152 (97%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1151 GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGA 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGA 205
Query 1211 GAAGAGTGCGAGCAAATGCAGCCTGAGCTTTGAGTTTCTTCTGTAATTTCGTGACCAACA 1270
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 206 GAAGAGTGCGAGCAAATGCAGCCCGAGCTTTGATTTTCTTCTGTAATTTCGTGACCAACA 265
Query 1271 AGGAACCTTTTCTTCGATTTATTGCTGATTGT 1302
|||||||| ||||| |||||||||||||||||
Sbjct 266 AGGAACCTCTTCTTTGATTTATTGCTGATTGT 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5