BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935294

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43780.1 | Symbols:  | unknown protein; Has 30 Blast hits to...   540    4e-153


> AT2G43780.1 | Symbols:  | unknown protein; Has 30 Blast hits 
to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:18136182-18137586 REVERSE 
LENGTH=661
Length=661

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 384/425 (90%), Gaps = 19/425 (4%)
 Strand=Plus/Plus

Query  1    AGGTTAAAGACTTTGAAGTAATGGCGGGATTTCCAGGTTTTAGTTACCTTGGTCCTAAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct  176  AGGTTAAAGACTTTGAAGTAATGGCGGGATTTCCAGGTTTTAGTTACCTAGG-CCCAAAA  234

Query  61   -GCAAGAACACAGTTGTAGCGGGTGGCTTGACAGCTTTTGTTTTTGGGGTATACTTCTAC  119
             |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  235  GGCAAGAACACGGTTGTAGCTGGTGGCTTGACAGCTTTTGTTTTTGGGGTATACTTCTAC  294

Query  120  ACAATGAGGGCGGTTGGTGGCACAGACGAGCTTCAAGTGGCTATAGACAAGTTCGAAGGC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  ACAATGAGGGCGGTTGGTGGCACAGACGAGCTTCAAGTGGCTATAGACAAGTTCGAAGGC  354

Query  180  CAAAAACAGGTTGACACCGACACCAAGGTTCCATCAAAGGTCTAATCCTCGCTGGCCTGA  239
            ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct  355  CAAAAACAGGTGGACACTGACACCAAGGTTCCATCTAAGGTCTAATCCTCACTGGCTTGA  414

Query  240  TATGTCCAACGAGACTTGTTTTTTATCTTTGTCTT-CCAAG-TT-TTTT---ACTTCA--  291
            |||||||||| | ||  ||| |||||||||| ||| ||||| || ||||   ||   |  
Sbjct  415  TATGTCCAACCAAACCCGTTATTTATCTTTG-CTTTCCAAGCTTCTTTTGTCACGAAAGT  473

Query  292  --C-CGTTTCTGACCTTGATTGGCATCTGTGTTTCGAGTCTCAGTCCAATCCATACATAA  348
              | |||||||||| | || |||||||||||||| ||||||||||||||||  ||  |||
Sbjct  474  GGCTCGTTTCTGACATCGAGTGGCATCTGTGTTT-GAGTCTCAGTCCAATC--TA--TAA  528

Query  349  TACATTGGTTAAACAAGAGAATGTATGATCAGGACATGGTTTTGATGTTCTTGACATCGT  408
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  529  TACATTGATTAAACAAGAGAATGTATGATCAGGACATGGTTTTGATGTTCTTGACATTGT  588

Query  409  CTTAA  413
            |||||
Sbjct  589  CTTAA  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19554154361


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5