BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935295
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43790.1 | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinas... 2037 0.0
> AT2G43790.1 | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase
6 | chr2:18138307-18140988 FORWARD LENGTH=1653
Length=1653
Score = 2037 bits (1103), Expect = 0.0
Identities = 1195/1238 (97%), Gaps = 11/1238 (1%)
Strand=Plus/Plus
Query 1 AGCTTTCATCTTTACCGGTCATGGACGGTGGTTCAGGTCAACCGGCGGCTGATACAGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 AGCTTTCATCTTTACCGGTCATGGACGGTGGTTCAGGTCAACCGGCGGCTGATACAGAGA 210
Query 61 TGACGGAAGCT-CTCGGTGGTGTTCCCGCGGCGGCTCCTTCTCAGCCATCGCCTCAGATG 119
|||| |||||| || || ||| |||||||||||| || |||||||||||||||
Sbjct 211 TGACAGAAGCTCCT-GGAGGTTTTCCCGCGGCGG------CT---CCATCGCCTCAGATG 260
Query 120 CCCGGTATTGAGAATATTCCGGCGACTCTTAGCCATGGTGGTAGGTTTATTCAGTATAAC 179
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCTGGGATTGAGAATATTCCGGCGACTCTTAGCCATGGTGGTAGGTTTATTCAGTATAAC 320
Query 180 ATATTTGGAAACATCTTTGAGGTCACCGCTAAGTATAAGCCTCCGATCATGCCTATTGGC 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATATTTGGAAACATCTTCGAGGTCACCGCTAAGTATAAGCCTCCGATCATGCCTATTGGC 380
Query 240 AAGGGTGCTTATGGCATCGTTTGTTCGGCTATGAACTCTGAAACAAATGAGAGCGTTGCA 299
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 381 AAGGGTGCTTATGGCATCGTTTGTTCGGCTATGAATTCTGAAACTAACGAGAGCGTTGCG 440
Query 300 ATTAAGAAAATCGCTAACGCTTTTGACAATAAGATTGATGCAAAGAGGACTCTCCGTGAG 359
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 441 ATTAAGAAAATTGCTAACGCTTTTGACAATAAGATTGATGCTAAGAGGACTCTCCGTGAG 500
Query 360 ATTAAACTGCTTCGTCATATGGATCATGAAAATATTGTTGCAATCAGAGATATAATCCCG 419
|| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 501 ATCAAGCTGCTTCGTCACATGGATCATGAAAATATTGTTGCAATCAGAGATATTATCCCG 560
Query 420 CCACCATTAAGAAACGCTTTCAACGATGTTTACATCGCGTATGAGCTAATGGACACTGAT 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 561 CCACCATTAAGAAACGCTTTCAACGATGTTTACATCGCGTATGAGTTAATGGACACTGAT 620
Query 480 CTCCATCAAATCATACGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGTATTTTCTT 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGTATTTTCTT 680
Query 540 TACCAGATCCTCCGTGGATTGAAATACATTCATTCCGCAAATGTGCTTCACAGGGATTTG 599
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 681 TACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAATGTGCTTCACAGGGATTTG 740
Query 600 AAACCAAGTAATCTCCTCCTGAACGCAAACTGCGACCTAAAAATCTGCGATTTTGGGCTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAACCAAGTAATCTCCTCCTGAACGCAAACTGCGACCTAAAAATCTGCGATTTTGGGCTA 800
Query 660 GCTCGAGTCACTTCCGAGAGTGATTTCATGACTGAATATGTTGTCACGAGATGGTACCGT 719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GCTCGAGTCACTTCTGAGAGTGATTTCATGACTGAATATGTTGTCACGAGATGGTACCGT 860
Query 720 GCACCAGAGCTGCTCTTAAACTCTTCTGATTATACTGCAGCTATCGATGTTTGGTCTGTA 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GCACCAGAGCTTCTCTTAAACTCTTCTGATTATACTGCAGCTATCGATGTTTGGTCTGTA 920
Query 780 GGCTGTATTTTCATGGAGTTAATGGACCGTAAGCCACTCTTCCCTGGACGAGATCATGTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GGCTGTATTTTCATGGAGTTAATGGACCGTAAGCCACTCTTCCCTGGACGAGATCATGTC 980
Query 840 CATCAGCTTCGCTTGCTCATGGAGCTCATAGGAACTCCATCAGAAGCAGAGCTTGAGTTC 899
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 981 CATCAGCTTCGCTTGCTCATGGAGCTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTC 1040
Query 900 TTGAACGAAAATGCAAAGCGATACATAAGACAGCTTCCACCTTATCCTCGCCAATCCATC 959
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TTGAACGAAAACGCAAAGCGATACATAAGACAGCTTCCACCTTATCCTCGCCAATCCATC 1100
Query 960 ACTGATAAGTTCCCGACAGTGCATCCTTTAGCTATAGACCTTATCGAGAAGATGTTAACA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACTGATAAGTTCCCGACAGTGCATCCTTTAGCTATAGACCTTATCGAGAAGATGTTAACA 1160
Query 1020 TTTGATCCTAGACGGAGAATCACAGTTTTAGACGCATTGGCCCATCCATACCTGAACTCA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTTGATCCTAGACGGAGAATCACAGTTTTAGACGCATTGGCCCATCCATACCTGAACTCG 1220
Query 1080 TTGCACGACATAAGCGATGAGCCAGAGTGTACGATACCTTTCAACTTTGACTTTGAAAAC 1139
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1221 TTGCACGACATAAGCGATGAGCCAGAGTGTACAATACCTTTCAACTTTGATTTTGAAAAC 1280
Query 1140 CATGCACTCTCAGAGGAGCAAATGAAGGAACTTATCTACCGCGAGGCGCTTGCTTTCAAT 1199
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1281 CATGCACTCTCAGAGGAGCAGATGAAGGAACTAATCTACCGCGAGGCGCTTGCTTTCAAT 1340
Query 1200 CCAGAATATCAGCAATAATTTAAAGAACAGCATTTGGG 1237
||||||||||||||||| ||| ||||||||||||||||
Sbjct 1341 CCAGAATATCAGCAATAGTTTGAAGAACAGCATTTGGG 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792859995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5