BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935298

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43810.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   496    7e-140


> AT2G43810.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr2:18149311-18151295 FORWARD LENGTH=842
Length=842

 Score =  496 bits (268),  Expect = 7e-140
 Identities = 301/317 (95%), Gaps = 1/317 (0%)
 Strand=Plus/Plus

Query  1    TGGTTTCTAAAGCAGAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAAA  60
            ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  132  TGGTTTCT-TAGCAAAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGA  190

Query  61   CACCTGCTGATTTCTTGAAGTCTATCCGTGGTAAACCAGTTGTTGTGAAACTCAACTCTG  120
            ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct  191  CACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTG  250

Query  121  GTGTTGATTATCGAGGCATTCTCACTTGTCTTGATGGGTATATGAACATCGCAATGGAGC  180
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  251  GTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGC  310

Query  181  AAACCGAAGAGTACGTAAATGGCCAGCTAAAGAACAAATATGGCGACGCTTTTGTCCGTG  240
            ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  311  AAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTG  370

Query  241  GCAACAATGTTCTTTACATCAGCACAACGAAGGGGACCTTGTCAGATGGAGCCTAGCTCT  300
            |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct  371  GCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAGCTCT  430

Query  301  CTTTCAACACCATGAAT  317
            |||||| ||||||||||
Sbjct  431  CTTTCATCACCATGAAT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5