BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935301
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43850.1 | Symbols: | Integrin-linked protein kinase family... 2453 0.0
AT3G59830.1 | Symbols: | Integrin-linked protein kinase family... 1164 0.0
> AT2G43850.1 | Symbols: | Integrin-linked protein kinase family
| chr2:18159182-18162044 REVERSE LENGTH=1835
Length=1835
Score = 2453 bits (1328), Expect = 0.0
Identities = 1424/1471 (97%), Gaps = 3/1471 (0%)
Strand=Plus/Plus
Query 11 TTTTT-CATCAATGGAGAACATAACCGCGCAGCTAAAACGAGGGATCTCAAGACAATTCT 69
||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 50 TTTTTGCATCAATGGAGAACATAACCGCGCAGCTCAAACGAGGTATCTCAAGACAATTCT 109
Query 70 CAACTGGTTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCATCTCTTGACC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CAACTGGTTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCATCTCTTGACC 169
Query 130 CTCGTCGGACCAACATGAGGTTTAGTTTTGGTCGTCAGTCTTCTTTAGATCCGATCCGGA 189
||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||| |||
Sbjct 170 CTCGTAGGACCAACATGAGGTTTAGTTTCGGTCGTCAGTCTTCTCTCGATCCGATCAGGA 229
Query 190 GGAGTCCTGATTCTGT-TAGGAGCGACGACGAGCCACATATGTCGGTGCCGGAGAATCTC 248
|||||||||||||| | | ||| || |||||||||||||||||||| ||||||||||||
Sbjct 230 GGAGTCCTGATTCT-TCCAAGAGTGATGACGAGCCACATATGTCGGTACCGGAGAATCTC 288
Query 249 GATTCCACGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGAGGAATCGAAGAG 308
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 289 GATTCGACGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGAGGAATCGAGGAG 348
Query 309 CTTCTTGATGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGTACGGCGCTTCAC 368
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 349 CTTCTTGACGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGGACGGCGCTTCAC 408
Query 369 ATCGCCGCTTGTGAGGGACATCTTGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAAC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ATCGCCGCTTGTGAGGGACATCTTGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAAC 468
Query 429 ATTGATGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTATTATGGGAAT 488
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 ATTGATGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTACTATGGGAAT 528
Query 489 TTAGATATTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACCAGGAAGACT 548
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 529 TTAGATGTTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACTAGGAAGACT 588
Query 549 CCGATGACTGTGTCGAATCCACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGATT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 589 CCGATGACTGTGTCGAATCCACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGGTT 648
Query 609 CAAGTTAGGAAAGCTGATGGCATCTCAAAGGGAGCATATCAAGTAGCTAAATGGAATGGC 668
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CAAGTCAGGAAATCTGATGGCATCTCAAAGGGAGCATATCAAGTAGCTAAATGGAATGGC 708
Query 669 ACGCGTGTTTCGGTCAAAATACTTGATAAAGATAGCTACTCAGACCCGGAACGCATAAAC 728
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 709 ACGCGGGTTTCAGTCAAAATACTTGATAAAGATAGTTACTCAGACCCGGAACGCATAAAC 768
Query 729 GCATTTAGACATGAATTGACGTTGCTAGAAAAAGTCCGGCATCCAAATGTTATCCAGTTT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GCATTTAGACATGAATTGACGTTGCTAGAAAAAGTCCGGCATCCAAATGTTATCCAGTTT 828
Query 789 GTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTACAATCCGAAAGGA 848
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 829 GTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTATAATCCGAAAGGA 888
Query 849 GATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCTTCCAAGGCACTTAGATTT 908
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 889 GATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCATCCAAGGCACTTAGATTT 948
Query 909 GCTCTTGATATTGCCAGGGGCATGAACTACCTCCATGAATGTAAACCAGATCCAATCATT 968
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GCTCTTGATATTGCCAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCAATCATT 1008
Query 969 CACTGTGATCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAAGATCTCG 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CACTGTGATCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAAGATCTCA 1068
Query 1029 GGATTTGGTATGATAAGATTGTCGAAAATTTCACAAGACAAGGCGAAAGTAGCAAACCAC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GGATTTGGTATGATAAGATTGTCGAAAATTTCACAAGACAAGGCGAAAGTAGCAAACCAC 1128
Query 1089 AAAGCACATATAGATCTCTCAAATTACTACATTGCACCAGAGGTTTATAAAGACGAAATA 1148
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AAAGCACATATAGATCTCTCTAATTACTACATTGCACCAGAGGTTTATAAAGACGAAATA 1188
Query 1149 TTTGACCGAAGGGTCGATGCACACTCCTTTGGTGTCATTTTATACGAGATAACAGAGGGA 1208
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TTCGACCTAAGGGTTGATGCACACTCCTTTGGTGTCATTTTATACGAGATAACAGAGGGA 1248
Query 1209 GTACCAGTTTTCCATCCGAGACCTCCTGAAGAAGTTGCGAAAATGATGTGCTTAGAAGGA 1268
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1249 GTACCAGTTTTCCATCCGAGACCTCCTGAAGAAGTTGCGAGAATGATGTGCTTAGAAGGA 1308
Query 1269 AAGAGACCAGTATTTAAAACTAAGTCAAGAAGTTACCCTCCAGATATAAGAGAGTTGATA 1328
|||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1309 AAGAGACCTGTATTCAAAACTAAGTCAAGAAGTTACCCTCCAGATATAAAAGAGTTGATC 1368
Query 1329 GAGAAATGTTGGCATCCAGAAGCCGCTATTAGACCGACATTCTCTGAAATTATTATTCGA 1388
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1369 GAGAAATGTTGGCATCCAGAAGCGGGTATTAGACCGACATTCTCTGAAATTATTATTCGA 1428
Query 1389 CTTGACAAAATAGTAGCTAATTGCTCAAAACAAGGATGGTGGAAAGACACATTCAAGTTC 1448
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1429 CTTGACAAAATAGTAGCAAATTGCTCTAAACAAGGATGGTGGAAAGACACATTCAAGTTC 1488
Query 1449 CCTTGGAAATAAAAGGAGAAGAAGAAGAAGG 1479
|||||||||||||||| |||||||||| |||
Sbjct 1489 CCTTGGAAATAAAAGGGGAAGAAGAAGGAGG 1519
> AT3G59830.1 | Symbols: | Integrin-linked protein kinase family
| chr3:22102803-22105380 REVERSE LENGTH=1694
Length=1694
Score = 1164 bits (630), Expect = 0.0
Identities = 1204/1476 (82%), Gaps = 60/1476 (4%)
Strand=Plus/Plus
Query 17 ATCAATGGAGAACATAACCGCGCAGCTAAAACGAGGGATCTCAAGACAATTCTCAACTGG 76
||| ||||| ||||| |||||||| | || || ||||| || ||||||||||| || ||
Sbjct 55 ATC-ATGGACAACATTGCCGCGCAGTTGAAGCGTGGGATATCGAGACAATTCTCGACAGG 113
Query 77 TTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCA-TCTCTTGACCCTCGTC 135
|| || | |||||||| |||||||| |||||||| || | ||||| || || || |
Sbjct 114 ATCAATGAGACGAACATTAAGCCGACAATTCACGCGCCA-AAATTCTCTCGATCCACGGC 172
Query 136 GGACCAACATGAGGTTTAGTTTTGGTCGTCAGTCTTC-TTTAGATCCGATCCGGA-GGAG 193
| | ||||||||| || || || |||||||| ||||| || |||||||| | || | ||
Sbjct 173 GTAACAACATGAGATTCAGCTTCGGTCGTCAATCTTCGCTT-GATCCGAT-CAGACGTAG 230
Query 194 TCCTGATTCTGTTAGGAGCGACGACGAGCCACATATGTCGGTGCCGGAGAATCTCGATTC 253
|||||| ||| || ||| | |||||| |||||||| || || |||||||| |||||
Sbjct 231 TCCTGAGTCTCTT---AGC--TG-CGAGCCGCATATGTCTGTCCCCGAGAATCTTGATTC 284
Query 254 CACGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGA-GGAATCGAAGAGCTTC 312
||||||||||||||||||||||| || ||||||||||| | | || | || ||||| |
Sbjct 285 GACGATGCAGCTTCTCTTTATGGCGAGTAAAGGTGATGTTA-ATGGCGTTGAGGAGCTGC 343
Query 313 TTGATGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGTACGGCGCTTCACATCG 372
|| |||||||||| ||||| |||||||| ||||||||||| ||||| || |||||||| |
Sbjct 344 TTAATGAAGGAATAGATGTGAATAGCATTGATCTTGATGGTCGTACTGCTCTTCACATTG 403
Query 373 CCGCTTGTGAGGGACATCT-TGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAACATT 431
| | ||||| || ||| | || ||| ||||||| ||||||||||||||||||||| ||
Sbjct 404 CTTCCTGTGAAGGTCAT-TATGATGTTGTTAAGGTTCTTCTTAGCCGGAGAGCTAATATC 462
Query 432 GATGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTATTATGGGAAT-TT 490
|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 463 GATGCTCGTGATCGTTGGGGTAGTACGGCGGCTGTTGATGCAAAGTATTATGGGAATGTT 522
Query 491 AGATA-TTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACCAGGAAGACTC 549
|| | |||| ||||||||||| |||||||| ||||||| ||||||||| || |||||||
Sbjct 523 -GA-AGTTTATAATCTCTTGAAAGCTCGAGGCGCTAAAGCTCCGAAAACTAGAAAGACTC 580
Query 550 CGATGACTGT-GTCGAATCCACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGATT 608
| ||||| || | ||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 581 CAATGACGGTAG-GGAATCCAAAAGAAGTTCCTGAGTATGAGCTTAATCCACTCGAGCTG 639
Query 609 CAAGTTAGGAAAGCTGATGGCATCTCAAAGGGAGCATATCAAGTAGCTAAATGGAATGGC 668
||||| | |||| ||||||||| ||||||||| | |||||||| |||||||||||||||
Sbjct 640 CAAGTCCGAAAAGTTGATGGCATTTCAAAGGGAACTTATCAAGTTGCTAAATGGAATGGC 699
Query 669 ACGCGTGTTTCGGTCAAAATACTT-GATAAAGATAGCTACTCAGACCCGGAACGCA-TAA 726
||||| || || || |||||| || |||||||||||||| ||||| || ||||| | |||
Sbjct 700 ACGCGAGTCTCAGTAAAAATA-TTCGATAAAGATAGCTATTCAGATCCTGAACG-AGTAA 757
Query 727 ACGCATTT-AGACATGAATTGACGTTGCTAGAAAAAGTC-CGGCATCCAAATGTTATCCA 784
| || ||| | | | |||||||| ||||||| ||||| | |||||||||||| || | ||
Sbjct 758 ATGC-TTTCACAAACGAATTGACTTTGCTAGCAAAAG-CTCGGCATCCAAATATTGTTCA 815
Query 785 GTTTGTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTACAATCCGAA 844
||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||| ||
Sbjct 816 ATTTGTTGGAGCCGTCACTCAAAATCTACCGATGATGATTGTAGTTGAGTGTAATCCAAA 875
Query 845 AGGAGATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCTTCCAAGGCACTTAG 904
||| ||| ||||||| ||||| ||||||||||| |||||||||||||| || || || ||
Sbjct 876 AGGTGATCTAAGTGTCTATCTTCAAAAGAAAGGTCGTCTTTCTCCTTCAAAAGCTCTGAG 935
Query 905 ATTTGCTCTTGATATTGCCAGGGGCATGAACTACCTCCATGAATGTAAACCAGATCCAAT 964
|||||||||||||||||| || || |||||||||||||||||||||||||||||||| ||
Sbjct 936 ATTTGCTCTTGATATTGCTAGAGGAATGAACTACCTCCATGAATGTAAACCAGATCCGAT 995
Query 965 CATTCACTGTGA-TCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAAGA 1023
||| ||||| || | ||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 996 CATCCACTGCGAGT-TAATGCCAAAAAATATTTTGCTAGATAGAGGAGGGCAATTGAAGA 1054
Query 1024 TCTCGGGATTTGGTATGATAA-GATTGTCGAAA-ATTTCACAAGACAAG-GCGAAAGTAG 1080
|||| || |||||| |||||| | ||||| ||| ||| | |||||| | || |||||||
Sbjct 1055 TCTCTGGTTTTGGTTTGATAAAG-TTGTC-AAAGATTGGAGAAGACA-GTGCAAAAGTAG 1111
Query 1081 CAAACCACAAAGCACATATAGATCTCTCAAATTACTACATTGCACCAGAGGTTTATAAAG 1140
|||||| |||| || || ||| ||||||||||| || ||||| || |||| ||||
Sbjct 1112 TGAACCACGAAGCTCAAATCGATAAGTCAAATTACTATATAGCACCCGAAATTTACAAAG 1171
Query 1141 ACGAAATATTTGACCGAAGGG-TCGATGCACACTCCTTTGGTGTCATTTTATACGAGATA 1199
| ||| | || || ||||| | |||| || || |||||||||||||| |||||| |
Sbjct 1172 ATGAAGTCTTCGATAAAAGGGCT-GATGTGCATTCGTTTGGTGTCATTTTGTACGAGTTG 1230
Query 1200 ACAGAGGGAGTACCAGTT-TTCCATCCGAGACCTCCTGAAGAAGTTGCGAAAAT-GATGT 1257
|| ||||||||| | || |||||||| | ||| |||||||| ||||| | ||| ||| |
Sbjct 1231 ACCGAGGGAGTATCT-TTATTCCATCCTAAACCACCTGAAGAGGTTGC-AGAATCGATTT 1288
Query 1258 GCT-TAGAAGG-AAAGAGACCAGTATTTAAAACTAAGTCAA-GAAGTTACCCTCCAGATA 1314
| | ||||||| ||| |||||| | | | ||| ||||||| || |||||||||| || |
Sbjct 1289 G-TATAGAAGGTAAA-AGACCAACAATCAGAACAAAGTCAAAGA-GTTACCCTCCGGA-A 1344
Query 1315 T--AAGAGAGTTGATAGAGAAATGTTGGCATCCAGAAGCC-GCTATTAGACCGACATTCT 1371
| || ||||||||| ||| |||| |||||||||||| | | | | || || | |||||
Sbjct 1345 TTGAA-AGAGTTGATTGAGGAATGCTGGCATCCAGAAATCAG-TGTGAGGCCAATATTCT 1402
Query 1372 CTGAAATTATTATTCGACTTGACAAAATAGT-AGCTAATTGCTCAAAACAAGGATGGTGG 1430
|||| ||||||||||| || ||||| ||||| | | || || || || || || ||||||
Sbjct 1403 CTGAGATTATTATTCGGCTCGACAAGATAGTTA-CAAACTGTTCCAAGCAGGGTTGGTGG 1461
Query 1431 AAAGACACATTCAAGTTCCCTTGGAAATAAAA-GGA 1465
||||||||||| |||||||||||||||| ||| |||
Sbjct 1462 AAAGACACATTTAAGTTCCCTTGGAAATGAAATGGA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5