BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935305
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43880.1 | Symbols: | Pectin lyase-like superfamily protein... 1892 0.0
> AT2G43880.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:18173034-18174482 FORWARD LENGTH=1185
Length=1185
Score = 1892 bits (1024), Expect = 0.0
Identities = 1127/1177 (96%), Gaps = 5/1177 (0%)
Strand=Plus/Plus
Query 30 AACATCTCCTTTCCTTGTGCCATCATATTTTTCT-T-T-AATGTTTTCTTCTTTATCAAC 86
||||||||||||||||| |||||||||||||||| | | ||| |||||||||| |||||
Sbjct 10 AACATCTCCTTTCCTTGCGCCATCATATTTTTCTCTATCAATATTTTCTTCTTAATCAAG 69
Query 87 TCATCACACGCAATGCCATCGTTTAACGTACAAAGATACGGAGCTAGAGGTGACGGAAGA 146
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 70 TCATCACACGCAATGCCATCGTTTAACGTCCAAAGGTACGGAGCTAGAGGTGATGGGAGA 129
Query 147 ACAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCTTTAGCCTGCGGCTCACGGGCTCGA 206
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 130 GCAGATGCGACCAAGTCCTTTTTGACAGCTTGGTCATTAGCCTGCGGCTCACGGGCTCGA 189
Query 207 GCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCT 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GCCATGGTCTACGTTCCCCGTGGAACATATTTGGTCAAAAACCTAGTCTTTTGGGGTCCT 249
Query 267 TGCAAGAACATTATTACTTTCAAAAACGATGGAACACTCGTGGCTCCTGCGAACTACTGG 326
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 250 TGCAAGAACATTATAACTTTCAAAAACGATGGAACACTCGTGGCTCCAGCGAACTACTGG 309
Query 327 GATATAGGTAATTCTGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTAC 386
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GATATAGGTAATTCCGGTTATTGGATTCTTTTCGCTAAAGTAAACCGGATCTCGGTTTAC 369
Query 387 GGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGCCAT 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 370 GGTGGCACCATTGATGCTAGAGGAGCTGGTTATTGGTCTTGTAGAAAGAAAGGTAGTCAT 429
Query 447 TGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAATGTGT-TACTAAGTGG 505
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 430 TGTCCTCAAGGTGCAAGGTCTATATCGTTCAGCTGGTGCAATAACGT-TCTACTAAGTGG 488
Query 506 TCTAACGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCCTCTAATGTTCG 565
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 489 TCTATCGTCGTTTAATAGCCAGAATATGCACGTCACGGTTCATCATTCTTCTAATGTTCG 548
Query 566 GATTCAAAACATAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACAT 625
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 549 GATTGAAAACGTAAGAATTAGGGCTCCAAGTGGAAGCCCTAACACCGATGGTATCCACGT 608
Query 626 ACAGTCTTCTTCCGGAGTCACCATTAGTGGTGGAACCATTGCGACCGGTGATGACTGCAT 685
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 609 ACAGTCTTCTTCTGGAGTCACCATTAGTGGCGGAACCATTGCGACCGGTGATGACTGCAT 668
Query 686 TGCTCTTAGTCAAGGATCTAGGAACGTTTGGATCGAACGTGTGAATTGTGGACCGGGACA 745
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 669 TGCACTTAGTCAAGGATCTAGGAACATTTGGATCGAACGTGTCAATTGTGGACCGGGACA 728
Query 746 TGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAGGGTGTGCAGAATGTAAC 805
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 729 TGGAATCAGCATTGGGAGTCTTGGGGATTACGCTAATGAGGAAGGTGTGCAAAATGTAAC 788
Query 806 CGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAAACTTGGGCTAG 865
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 789 CGTTACGAGCTCTGTTTTCACCAAGACGCAGAACGGAGTAAGAATAAAGACATGGGCTAG 848
Query 866 GCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTCGG 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 849 GCCTAGCAGAGGGTTTGTGAATAATGTGGTATTTCGAAATTTGATAATGAATAATGTTGA 908
Query 926 TAATCCGGTGATAATCGATCAAAACTACTGTCCTAATGGAAATGGCTGTCCTCGTCAGAG 985
|||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 909 AAATCCGGTGATAATCGATCAAAACTATTGTCCTAATGGAAAAGGTTGTCCTCGCCAGAG 968
Query 986 CTCTGGCGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGAACATCAACAACACC 1045
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 969 CTCTGGAGTGAAGATAAGTGGAGTGACTTTTGCAAACATAAAGGGGACATCAACAACACC 1028
Query 1046 AATAGCTATGAAATTGGATTGTAGTGGAAGCAGTCATTGCACAGGGCTTAGGTTACAAGA 1105
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1029 AATAGCAATGAAGTTGGATTGTAGTGGAAGCAATCATTGCACAGGGCTTAGGTTACAAGA 1088
Query 1106 CATTAAGCTCACATACATGAGAAGATCATCAGCTTCTTACTGTAGGAACGCCCATGGAAG 1165
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1089 CATTAAGCTTACTTACATGAGAAGATCATCAGCTTCTTATTGTAGGAACGCCCATGGACG 1148
Query 1166 AGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA 1202
|||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGCCTCTGGAGTTATGGTTCCAAGGAATTGTATGTGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5