BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935306
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43890.1 | Symbols: | Pectin lyase-like superfamily protein... 1772 0.0
> AT2G43890.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:18176924-18178390 FORWARD LENGTH=1179
Length=1179
Score = 1772 bits (959), Expect = 0.0
Identities = 1076/1133 (95%), Gaps = 6/1133 (1%)
Strand=Plus/Plus
Query 56 TCTTGCTGATGAAATCATCAACGGCTGCGAACAACTACAATGTCGTCAGCTTCGGTGCTA 115
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 50 TCTTGCTGATGAAATCATCAACGGCTGCTTCCAACTACAATGTTGTCAGCTTCGGTGCTA 109
Query 116 AACCGGACGGAAGAACCGACTCCAC-AGAAGCTTTCCTGGGAGCGTGGCAAGCAGCTTGC 174
|||||||||| ||||||||||||| | |||| ||||| || ||||||||||||||||||
Sbjct 110 AACCGGACGGTCGAACCGACTCCACTA-AAGCCTTCCTTGGCGCGTGGCAAGCAGCTTGC 168
Query 175 CGTTCAGCTGCAGCAGTCACTGTAACGGTCCCGAGAGGAAGCTTCTTGCTAAAACCGGTG 234
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 169 CGTTCAGCTGCAGCGGTTACTGTAACGGTCCCGAGAGGAAGCTTCTTGCTCAAACCGGTG 228
Query 235 GAGTTTCGTGGTCCATGTCGCAGTAGAATCACGTTTCAGATCTATGGAACGATTGTTGCT 294
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 229 GAGTTTCGAGGTCCATGCCGCAGTAGAATAACGTTTCAGATCTATGGAACGATTGTAGCT 288
Query 295 CCTTCGGATTACCGTGGTTTGGGGAATTCCGGTTATTGGATCTTGTTCGTGAAAGTTAAC 354
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 289 CCTTCGGATTACCGCGGTTTGGGAAATTCCGGTTATTGGATCTTGTTCGTGAAAGTTAAC 348
Query 355 CGGATCTCAATCAATGGAGGAACGTTAGATGCTAGAGGCGCTTCTTTTTGGGCGTGTCGA 414
||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 349 CGGATCTCAATCATTGGAGGAACTTTAGATGCTAGAGGTGCTTCTTTTTGGGCTTGTCGA 408
Query 415 AAATCCGGAAAGAGTTGCCCTGTTGGCGCCAGATCAATGACGTTTAACTGGGCAAACGAC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AAATCCGGAAAGAGTTGCCCTGTTGGCGCCAGATCAATGACGTTTAACTGGGCAAACGAC 468
Query 475 GTAGTAGTGACCGGCTTAACGTCAATAAACAGTCAAGCAACACATTTAGTGATAAATAGC 534
|| ||||| | ||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 469 GTCGTAGTTAGTGGCTTAACGTCTATAAACAGTCAAACAACACATTTAGTGATAAACAGC 528
Query 535 TGCAACAATGTAATTGTCCGGAAAGTAAAGCTAGTGGCTCCAGACCAAAGTCCCAACACA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 529 TGCAACAATGTAATTGTCCGGAAAGTAAAGCTAGTGGCTCCAGACCAAAGTCCGAACACA 588
Query 595 GATGGCCTTCACGTCCAAGGTTCTGCTGGTGTTACCGTAACCGATAGCACATTCCAAACC 654
|||||||| |||||||||||||||||||||||||||||||||||| |||| || || |||
Sbjct 589 GATGGCCTCCACGTCCAAGGTTCTGCTGGTGTTACCGTAACCGATGGCACTTTTCATACC 648
Query 655 GGAGATGATTGTATCTCAATCGGTCCTGGAACTCGTAACCTCTACATGTCTAAACTCAAT 714
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 649 GGAGATGATTGTATCTCTATTGGTCCAGGAACTCGTAACCTCTACATGTCTAAACTCAAT 708
Query 715 TGCGGTCCAGGCCATGGAATCAGTATTGGGAGTTT-GGGAAGAGATGCAAATGAAGCTGG 773
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 709 TGCGGTCCAGGCCATGGAATCAGTATTGGGAGTTTAGGGA-GAGATGCAAATGAAGCTGG 767
Query 774 AGTAGAGAACATAACGTTGATAAACTCTGTTTTTTCAGGTTCCGATAATGGTGTTCGGAT 833
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 768 AGTAGAGAACATAACGTTGATAAACTCTGTTTTTTCGGGCTCGGATAATGGTGTTCGGAT 827
Query 834 CAAGACATGGGCTAGACAAAGTACAGGTTTTGTAAGAAACGTTTTGTTTCAGAATCTGAT 893
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 828 CAAGACATGGGCTAGACAAAGTACAGGTTTTGTAAGAAACGTTTTGTTCCAGAATCTGAT 887
Query 894 CATGAAAAATGTTCAGAATCCGATCATTGTCGATCAGAATTACTGTCCG-GCTAATCAAG 952
|||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||
Sbjct 888 CATGAAAAATGTTCAGAATCCGATCATTGTCGATCAAAATTACTGCCCTAG-TAATCAAG 946
Query 953 GTTGTCCCAAACAGGGTTCTGGAGTGAAGATTAGTCAAGTTGTGTATAGAAACATTCAAG 1012
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 947 GTTGTCCTAAACAGGGTTCTGGAGTGAAGATTAGTCAGGTTGTGTATAGAAACATTCAAG 1006
Query 1013 GGACGTCGCGGAGGCAACAGGCTTTAACGTTTGATTGCAGTCGCAGTAATCCGTGCCAAG 1072
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GGACGTCGCGGACGCAACAGGCTTTAACGTTTGATTGCAGTCGCAGTAATCCGTGCCAAG 1066
Query 1073 CGATTAGATTACATGATATTAAGCTAACGTTTAACGGTCGGTCCGCTACTGCGACATGTA 1132
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1067 CGATTAGATTGCATGATATTAAGCTAACGTTTAACGGTCGGTCCGCTACTTCGACTTGTA 1126
Query 1133 AGAATATTAAAGGAGTTAAGGCTGGTGTAGTGATGCCTCAAGGTTGTCTTTGA 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AGAATATTAAAGGAGTTAAGGCTGGTGTAGTGATGCCTCAAGGTTGTCTTTGA 1179
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 22 ATGGATAATAATAAGCTTGTAGCTGTTTTG 51
||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAATAATAAGCTTGTAGCTGTTTTG 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5