BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935315
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43960.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 911 0.0
> AT2G43960.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr2:18203312-18204912 REVERSE
LENGTH=1481
Length=1481
Score = 911 bits (493), Expect = 0.0
Identities = 719/824 (87%), Gaps = 32/824 (4%)
Strand=Plus/Plus
Query 372 AGCCCAGTTTGTGGTGCGGTATGGGCGTTATTTTTGGTGGGCTCTGCGGGATAGAGTGTC 431
|||||| |||||| |||||||||||| |||||| ||| |||||| ||||||||||||||
Sbjct 401 AGCCCAATTTGTGTTGCGGTATGGGCAATATTTTCGGTTGGCTCTACGGGATAGAGTGTC 460
Query 432 TACTGATACTCAGTTCAAGTTTCTGGATAAGGGAGGTCCAAGGTATCACTTTTTCTCTCG 491
|||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 461 TACTGATACTGAGTTCAAGTTTCTGGATAAGGGAGATTCAAGGGCTCACTTTTTCTCTCT 520
Query 492 TATTTGTCTTCAATTTGGTCATCTAATAAGGGCTTGGGAATATCCTCCGGCTAGTATGGA 551
| ||| |||| | | |||||||| ||||||||||||||||||||| || | |||||||
Sbjct 521 TCTTTTTCTTGGGTATAGTCATCTATTAAGGGCTTGGGAATATCCTCTGGTTGGTATGGA 580
Query 552 AGCTCTTCTTGAAGGTTTTTTCACTGCTTTTAATGCTTTCAAGAAAAAGCTAGAGGATGA 611
| |||| |||| |||||| ||| |||||| ||| |||||||| |||||||||||| |||
Sbjct 581 TGTTCTTGTTGACGGTTTTCTCAGTGCTTTGAATTCTTTCAAGGAAAAGCTAGAGGGTGA 640
Query 612 TGAGGAGCTAGTGGACAAGGTTGAGACTGATAGGCGTGATTTTGTGGTTTGTGATGAGTA 671
||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||| ||
Sbjct 641 TGAGGAGCTAGTGGACAAGATTAAGACTGATAGGCATGATTTTGTTGTTTGTGATGAATA 700
Query 672 TTTTGTTGACCTCGAGAACAAAGCCCTTGAACTC--ATTC----CAATGGCCATGAGGCA 725
||||| |||||||||||||||||||||||||||| | || ||||||| | || |||
Sbjct 701 TTTTGCTGACCTCGAGAACAAAGCCCTTGAACTCAAACTCAAAACAATGGCTAGGATGCA 760
Query 726 TCCTCCTCTGAATGAACACGATTCTCAGGGTACATTCAGGGTGCCGCCTGACCTTATCTT 785
|| |||||||||| |||||||||||||||||||| |||||||||| |||| |||| ||||
Sbjct 761 TCATCCTCTGAATAAACACGATTCTCAGGGTACACTCAGGGTGCCACCTGTCCTTGTCTT 820
Query 786 GTTTAGAGTTAGG-ATCCCTGAAGGAGGCATGATGCGCAAGGAGCTTGGTATT-ATTAAG 843
|||||||||| || |||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 821 GTTTAGAGTT-GGAATCCCTCAAGGAGGCATGATGCGCAAGGAGCTTGGT-TTAATGAAG 878
Query 844 TTCACAGCCCTGTTTGTGGTGCGGTATGGGAATGAGTTTTGGGATGCTCTGTGGGATAGA 903
||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 879 TTCACAGCCATGTTTGTGGTGCGTTATGGGAATGATTTTTGGGATGCTCTGTGGGATAGA 938
Query 904 GTGTC---TACTGATACTCAG-TTCACGTTTCTGAAAAAGAATCATGGAAATGATAGAGG 959
||||| |||||| || || |||| ||||||||| | ||||| |||||||||||||||
Sbjct 939 GTGTCTAGTACTGAAACAGAGTTTCA-GTTTCTGAAGAGGAATCCTGGAAATGATAGAGG 997
Query 960 AAGGTATACGCTTCTTTTCTCTCAGCTTCTGCTTGCGTATGGTAATGTAATA-AAGCCTT 1018
| || ||||||||||||||||||||| ||||| | |||||||||| || || ||||
Sbjct 998 -A---AT--GCTTCTTTTCTCTCAGCTTCTTCTTGCTTTTGGTAATGTAGTACAA-CCTT 1050
Query 1019 GGGGACTGATG-CCGAGAAAGAGTAACCCGCCGGCTCGTATGGAAGCTGTTCTTAAAGGG 1077
|||||||| || |||||| ||||||||||||| |||||||||||||||||||| | |||
Sbjct 1051 GGGGACTG-TGCCCGAGAGAGAGTAACCCGCCCGCTCGTATGGAAGCTGTTCTCGAGGGG 1109
Query 1078 TTTTTCACTGCTTTTAATGCTTTCAAGAAAAAGCAAGAGGATGAGGAGGATGAGGTAGTG 1137
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1110 TTTTTCACTGCTTTTAGTGCTTTCAAGAAAAAGCAAGAGGATGAGGAGGACGAGGTAGTG 1169
Query 1138 AACAAGGTTGTGAGTTGTGACTGATAGGCGTGATTTTGTGGTTA 1181
|||||| |||||| ||||||||||||||||||||||||
Sbjct 1170 AACAAGCTTGTGA-------CTGATAGGCGTGATTTTGTGGTTA 1206
Score = 427 bits (231), Expect = 1e-118
Identities = 321/363 (88%), Gaps = 12/363 (3%)
Strand=Plus/Plus
Query 14 AGaaaa-aaaTGAATGAAACTCCACCACTACCTCCAGATGATGATGATGATCTGAGACGT 72
|||||| ||| |||| |||||||||||| || ||||||||||||||| | |||||| ||
Sbjct 10 AGAAAACAAA-GAATAAAACTCCACCACCACGTCCAGATGATGATGA-G--CTGAGAAGT 65
Query 73 ATCATGTTGGAGAGGCTTTCAATTGCCGCCGCCAGAGGCGGGTTGGAGATGCAGGAGAAG 132
|| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 66 ATTATGTTGGAGAGACTTTCAATTGCCGCTGCCAGAGGCGGGTTGGAGATGGAGGAGAAG 125
Query 133 CTGAAGACCATATTTTTTGGCCTTGATATTCCATCATGCAGCTTTGTGTTCCCCAAAGGT 192
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 126 CTGAAGTCCAGATTTGTTGGCCTTGATATTCCATCATGCAGCTTTGTGTTCCCTAAAGGT 185
Query 193 CGTGATCACCATCTTTACAAGCATAAAATTGCTGAATACACTAAGtctcctcctcttcat 252
|||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 186 CGTGATCACCATATTTACAAGCAAAAAATTGCTGAGTACACCAAGTCTCCTCCTCTTCAT 245
Query 253 tctcctcctcctcctctccCACCAGGCCTAGTTGCTCAATGC-GATTTTAAGTCTAGCC- 310
||||||||||||| || || ||| |||||||||| ||||||| | ||| |||| || ||
Sbjct 246 TCTCCTCCTCCTC-TC-CC-ACCGGGCCTAGTTGATCAATGCTG-TTTAAAGTATAACCC 301
Query 311 TCACGGAGCAAGTTGCTCTTAACCACGAACTTTTTGCGTTTAAAGTCCGAGTCCCTGAAG 370
|| ||||||||||||| ||| | ||||||| | |||||||| ||| ||||||||||||
Sbjct 302 TCT-GGAGCAAGTTGCTATTATCGACGAACTGTCTGCGTTTACAGTTAGAGTCCCTGAAG 360
Query 371 GAG 373
|||
Sbjct 361 GAG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5