BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935321
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44020.1 | Symbols: | Mitochondrial transcription terminati... 2575 0.0
> AT2G44020.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:18217559-18219385 REVERSE
LENGTH=1827
Length=1827
Score = 2575 bits (1394), Expect = 0.0
Identities = 1511/1568 (96%), Gaps = 6/1568 (0%)
Strand=Plus/Plus
Query 2 TCTTCTGGGTATCTCCAGAATGAGCTATCTTCTTCTCAGGAGGAACAAGTTCTTAGCTTT 61
|||||||||||||||||||||||||||||||| | | ||||||||||||||| |||||||
Sbjct 107 TCTTCTGGGTATCTCCAGAATGAGCTATCTTC-T-T-AGGAGGAACAAGTTCGTAGCTTT 163
Query 62 AATCAGAAGACAGAGTCTCATCTTTCCGATTACTTTCACTGAAACTAAAACCCTGATAAA 121
| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 164 ACTCAAAAGACAGAGTCTCATCTTTCCGATTACTTCCACTGAAGCTAAAACCCTGATAAA 223
Query 122 CCCAGATCCTAATATCCCTCAATTTCAAAACCCTTGTTCGATTTTCAGGATTGCTCACTA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CCCAGATCCTAATATCCCTCAATTTCAAAACCCTTGTTCGATTTTCAGGATTGCTCACTA 283
Query 182 TGCAACTCAATCTTCAAAGTTCCCGGAGTACGAGATGCCTACAGTCACATGGGGAGTTAT 241
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 284 TGCAACCCAATCTTCAAAGTTTCCAGAGTACGAGATGCCTACAGTCACATGGGGAGTTAT 343
Query 242 ACAGGGGAAGAAAGAGAAGCTCGTGAATCGTGTCAAAATCTGCGATTATCTCAAGGGTTT 301
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 344 ACAAGGGAAGAAAGAGAAGCTCGTGAATCGCGTCAAAATCTGCGACTATCTCAAGGGTTT 403
Query 302 GGGGATAATCACCGATGAATTGGAGAGTATTGAGCTACCTTCCACCATTGAAGTCATGTG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GGGGATAATCACCGATGAATTGGAGAGTATTGAGCTACCTTCCACCATTGAAGTCATGTG 463
Query 362 TGAGCGTGTTGAGTTCTTACAGAAGCTAGGGTTAACCATAGACGATATAAATGAGTATCC 421
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 464 TGAGCGTGTTGAGTTCTTACAGAAGCTAGGGTTAACGATTGACGATATAAATGAGTATCC 523
Query 422 TTTGATGTTAGGTTGTAGTGTGCGTAAGAATTTGATTCCTGTCTTGGCTTACTTAGAGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TTTGATGTTAGGTTGTAGTGTGCGTAAGAATTTGATTCCTGTCTTGGCTTACTTAGAGAA 583
Query 482 AATTGGAATCTCGAGATCGAAATTAGGAGAATTTGTTAAGAACTATCCTCAGGTTCTCCA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 584 AATTGGAATCTCGAGATCGAAATTAGGAGAATTTGTTAAGAACTATCCTCAGGTTCTACA 643
Query 542 TGCAAGTGTGGTTGTTGAGCTTGCTCCTGTGGTTAAGTTTCTTAGAGGACTCGACGTGGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 644 CGCAAGTGTGGTTGTTGAGCTTGCTCCTGTGGTTAAGTTTCTTAGAGGACTCGATGTGGA 703
Query 602 GAAGCAAGATTTGGGGTATGT-TCTGATGAAGTATCCTGAGCTGTTAGGGTTTAAGCTCG 660
||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| |
Sbjct 704 GAAGCAAGATTTGGGTTATGTAT-TGATGAAGTATCCTGAGCTGCTAGGGTTTAAGCTTG 762
Query 661 AAGGCACCATGAGCACATCGGTTGCGTATTTGGTGAGCATTGGTGTGAGTCCTAGGGATA 720
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 763 AAGGCACGATGAGCACATCGGTTGCGTATTTGGTGAGCATTGGTGTGAGTCCTAGGGACA 822
Query 721 TTGGTCCAATGGTGACTCAGTATCCTTATCTTTTGGGAATGAGAGTTGGAACCATGATCA 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTGGTCCAATGGTAACTCAGTATCCTTATCTTTTGGGAATGAGAGTTGGAACCATGATCA 882
Query 781 AACCTTTAGTAGATTATCTAATTTCCATTGGGTTGCCGAAGAAAATTGTGGCTAGGATGC 840
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 883 AGCCTTTAGTAGATTATCTAATTTCCATTGGTTTGCCAAAGAAAATTGTGGCTAGGATGC 942
Query 841 TAGAGAAACGTGCATATATAGTCGGATACAATCTCGAGGAGACTGTTAAACCAAATGTAG 900
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 943 TAGAGAAACGTTCATATATAGTTGGATACAATCTCGAGGAGACTGTTAAACCAAACGTAG 1002
Query 901 ATTGTTTGATTAGTTTTGGCGTCAAGAAAGAGCTACTACCATTGCTTATAGCTCAATATC 960
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1003 ATTGCTTGATTAGTTTTGGCGTCAAGAAAGAACTACTACCTTTGCTTATAGCTCAATATC 1062
Query 961 CTCAAATTCTCGGGTTACCGGTAAAAGCCAAGATGTCTACACAACAGTACTTTTTCAGCT 1020
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1063 CTCAAATTCTCGGGTTACCAGTGAAAGCCAAGATGTCTACACAACAGTACTTTTTCAGCT 1122
Query 1021 TGAAGCTCAAGATTGATCCTGAAGGATTCGCTCGTGTGGTAGAGAAAATGCCACAGATCG 1080
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1123 TGAAGCTCAAGATTGATCCTGAAGGATTTGCTCGTGTGGTAGAGAAAATGCCACAGATTG 1182
Query 1081 TAAGTCTTAAGCAGAATGTGATAATGAAACCCATTGAGTTTCTCTTGGGCAGGGCATTTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TAAGTCTTAAGCAGAATGTGATAATGAAACCCATTGAGTTTCTCTTGGGCAGGGCATTTC 1242
Query 1141 AAGTCGAGGACATTGCGAAAATGGTTGTGAGATGTCCTCAGATCCTATGTTCCCGAGTCG 1200
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1243 AAGTTGAGGACATTGCGAAAATGGTTGTGAGATGTCCTCAGATCCTCTGTTCCCGAGTGG 1302
Query 1201 AACTCATGAAGAATAGCTACTACTTTTACAAGACCGAGATGGGGAGACCGATGAAAGAAC 1260
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 AACTCATGAAGAATAGTTACTACTTTTACAAGACCGAGATGGGGAGACCGATGAAAGAAC 1362
Query 1261 TCGTGGAGTACCCTGAGTATTTTACTTATAGCTTGGAGTCAAGAATCAAACCAAGGTACC 1320
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1363 TCGTGGAGTACCCTGAGTACTTTACTTATAGCTTGGAGTCAAGAATCAAACCGAGGTACC 1422
Query 1321 AAAAACTACAGAGCAAAGGAATTAGGAGTTCATTGAACTGGTTCCTCAATTGCAGCGACC 1380
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1423 AAAAACTACAGAGCAAAGGAATCAGGAGTTCATTGAACTGGTTCCTCAATTGCAGTGACC 1482
Query 1381 AAAGATTCGAGGAACGGTTACAAGGTAACTTTATCGATCCAGATACTGAAGGTCCAATGT 1440
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||
Sbjct 1483 AAAGATTCGAGGAACGATTACAAGGTAACTTCATTGATCCAGATACTGAAGGTCCAACGT 1542
Query 1441 TCGACATGGGCGGGAAGTTAGAAATGCCTGGTGGCGAGATTGTGTCTGATGAGGAAGAAG 1500
| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1543 TTGACATGGGTGGGAAGTTAGAAATGCCTGGTGGCGAGATAGTGACTGATGAGGAAGAAG 1602
Query 1501 ATGAGAGTGATGATGAAGTTCTCTACAGACGCACTCTTACTTTGTAGAATAATCAAAAGT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATGAGAGTGATGATGAAGTTCTCTACAGACGCACTCTTACTTTGTAGAATAATCAAAAGT 1662
Query 1561 CTTT-AGC 1567
|||| |||
Sbjct 1663 CTTTTAGC 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77359039845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5