BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935323
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44050.1 | Symbols: COS1 | 6,7-dimethyl-8-ribityllumazine sy... 1229 0.0
> AT2G44050.1 | Symbols: COS1 | 6,7-dimethyl-8-ribityllumazine
synthase / DMRL synthase / lumazine synthase / riboflavin synthase
| chr2:18224251-18226160 FORWARD LENGTH=980
Length=980
Score = 1229 bits (665), Expect = 0.0
Identities = 704/723 (97%), Gaps = 1/723 (0%)
Strand=Plus/Plus
Query 3 AAA-TCCGACGAGCGAAACATGAAGTCATTAGCTTCGCCGCCGTGTCTCCGCCTGATACC 61
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 35 AAACTCCGACGAACGAAAAATGAAGTCATTAGCTTCGCCGCCGTGTCTCCGCCTGATACC 94
Query 62 GACGGCCCACCGTCAGCTCAATTCGCGTCAATCTTCCTCAGCCTGTTATATTCACGGTGG 121
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 95 GACGGCACACCGTCAGCTCAATTCGCGTCAATCTTCCTCCGCCTGTTATATACACGGTGG 154
Query 122 CTCTTCTGTGAACAAATCCAATAACCTCTCATTCTCCTCATCCACATCCGGATTTGCGTC 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 155 CTCTTCTGTGAACAAATCCAATAATCTCTCATTCTCCTCATCCACATCCGGATTTGCGTC 214
Query 182 ACCACTCGCTGTAGAGAAGGAATTACGCTCTTCATTCGTACAGACGGCTGCTGTTCGCCA 241
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 ACCACTAGCTGTAGAGAAGGAATTACGCTCTTCATTCGTACAGACGGCTGCTGTTCGCCA 274
Query 242 TGTTACTGGGTCTCTTATCAGAGGCGAAGGTCTTAGATTCGCCATCGTTGTAGCTCGTTT 301
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 275 TGTTACGGGGTCTCTTATCAGAGGCGAAGGTCTTAGATTCGCCATCGTGGTAGCTCGTTT 334
Query 302 CAATGAGGTTGTGACTAAGTTGCTATTGGAAGGAGCGATTGAGACTTTCAAGAAGTATTC 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 335 CAATGAGGTTGTGACTAAGTTGCTTTTGGAAGGAGCGATTGAGACTTTCAAGAAGTATTC 394
Query 362 AGTCAGAGAAGAAGACATTGAAGTTATATGGGTTCCTGGCAGCTTTGAGATTGGTGTTGT 421
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 395 AGTCAGAGAAGAAGACATTGAAGTTATTTGGGTTCCTGGCAGCTTTGAAATTGGTGTTGT 454
Query 422 TGCACAAAATCTTGGGAAATCGGGAAAATTTCATGCTGTTTTATGTATCGGCGCTGTGAT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TGCACAAAATCTTGGGAAATCGGGAAAATTTCATGCTGTTTTATGTATCGGCGCTGTGAT 514
Query 482 AAGAGGAGATACCACGCATTATGATGCTGTTGCCAACTCTGCTGCGTCTGGAGTACTTTC 541
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAGAGGAGATACCACACATTATGATGCTGTTGCCAACTCTGCTGCGTCTGGAGTACTTTC 574
Query 542 TGCTAGCATAAATTCAGGCGTTCCATGCATATTTGGTGTACTGACTTGCGAGGACATGGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TGCTAGCATAAATTCAGGCGTTCCATGCATATTTGGTGTACTGACTTGCGAGGACATGGA 634
Query 602 TCAGGCTTTAAATCGATCTGGTGGCAAAGCCGGCAATAAGGGAGCTGAAACTGCTTTGAC 661
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TCAGGCTCTGAATCGATCTGGTGGCAAAGCCGGCAATAAGGGAGCTGAAACTGCTTTGAC 694
Query 662 GGCGCTCGAAATGGCGTCGTTGTTTGAGCACCACCTGAAATAGCTCTGCTGGTTCCATGG 721
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 695 GGCGCTCGAAATGGCGTCGTTGTTTGAGCACCACCTGAAATAGCTCGGCTCGTTCGATGG 754
Query 722 ATG 724
|||
Sbjct 755 ATG 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5