BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935335

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44140.1 | Symbols:  | Peptidase family C54 protein | chr2:1...   156    1e-37


> AT2G44140.1 | Symbols:  | Peptidase family C54 protein | chr2:18253497-18258035 
REVERSE LENGTH=3221
Length=3221

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 131/151 (87%), Gaps = 14/151 (9%)
 Strand=Plus/Minus

Query  5    CTGAGAGATCGATCAAATGG-TTCAGCAGACGATGGAGATGGAGAACGCAAGGGAAAGAA  63
            |||||||||||||||||||| |||||||||||| ||||||||| |||||||  |   |  
Sbjct  138  CTGAGAGATCGATCAAATGGTTTCAGCAGACGACGGAGATGGAAAACGCAA--G---G--  86

Query  64   GAAGAAGAAGATCGATTTCGTGTTGTATCTTGCTCGCTTCAACGTCCCGTCGAAGATACC  123
            |  |  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  85   G--G--G-AGATCGATTTCGTGTCGTATCTTGCTCGCTTCAACGTCCCGTCGAAGATACC  31

Query  124  GCAGAGCAAAGAAACAACGTGTGTTTACTTT  154
             ||||||||||| | ||||||||||| ||||
Sbjct  30   TCAGAGCAAAGACA-AACGTGTGTTTCCTTT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11109172529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5