BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935339
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA... 1495 0.0
AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-m... 1051 0.0
> AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA:protein
N-myristoyltransferase (NMT), putative, similar to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834;
contains Pfam profiles PF01233: Myristoyl-CoA:protein
N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein
N-myristoyltransferase C-terminal domain; gene
contains a frameshift. This could be a pseudogene or a sequencing
error.; blastp match of 62% identity and 5.1e-121
P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl
transferase {Oryza sativa (japonica cultivar-group)}
| chr2:18265431-18267426 REVERSE LENGTH=1996
Length=1996
Score = 1495 bits (809), Expect = 0.0
Identities = 1183/1358 (87%), Gaps = 48/1358 (4%)
Strand=Plus/Plus
Query 4 TTTTGTGCAGACGAAATATCAA-AATGTCAGATCCAAAACCGAATCCTGTGGAAGACGCA 62
||||||||||||| ||||| ||||||||||||||||| ||| || ||||| || |||
Sbjct 551 TTTTGTGCAGACG----ATCAACAATGTCAGATCCAAAACTGAAGCCAGTGGAGGATGCA 606
Query 63 CAAGGTGCTGATGCC-AGAAGCTCACAAATTCAATTAGCCAAGGACGATACTTCACGTGG 121
| || | ||| |||| || |||||||||||||||||||||||||| ||||||||| ||||
Sbjct 607 CTAGTTACTGTTGCCAAG-AGCTCACAAATTCAATTAGCCAAGGATGATACTTCAGGTGG 665
Query 122 AACCATAGTTGGAAGGTTACTGCATTGCCAGTGTTGTTCAAAGACTCATAGTGGGTTCTG 181
|||||||||||||||||||||||| ||||||| || ||||||| |||| | |||||
Sbjct 666 AACCATAGTTGGAAGGTTACTGCAGTGCCAGTATT---CAAAGACCCATAA-G--TTCTG 719
Query 182 GGAGACTCAACCTGTGGCGCAGATAAAAGATATCGGAG-ACACGAGTTCGCCTGAAGGCC 240
||||||||||||||| | |||| | ||||||||| || ||||||||| |||||||||||
Sbjct 720 GGAGACTCAACCTGTTGAGCAGTTTAAAGATATCC-AGGACACGAGTTTGCCTGAAGGCC 778
Query 241 CAATTGAACCCGCAACTTTGGTATCTGAGGTCAAGCCAGAGCCGTATAACCTTCCTGGTC 300
||||||| |||||||||||||| ||||||||||||| ||||||||| ||||||| |||||
Sbjct 779 CAATTGAGCCCGCAACTTTGGTGTCTGAGGTCAAGCAAGAGCCGTACAACCTTCTTGGTC 838
Query 301 AATTTGAATGGACCATATGCGATATGAACTCTGATGATATGTGTTCAGAGATGTACAACT 360
|||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 839 AATTCGAATGGACCATATGCGATATGAACTCTGACGATATGTGTTTAGAGATGTACAACT 898
Query 361 TTCTCAAGGAAAACTA-TCCTGATGACGGACATAGGTTCAAGGT-TGATTACTCCAAGGA 418
|||||||||||||| | |||||||||| ||| | | |||| | ||| |||||||| ||
Sbjct 899 TTCTCAAGGAAAAC-AGTCCTGATGACA-ACAGA--T-CAAG-TATGAGTACTCCAAAGA 952
Query 419 GTTTCTAAAGTGGGCATTGTGTCCGCCTGGTTATTATCAGAACTGGCATATTGGAGTCCG 478
|| ||||| ||||||| ||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 953 GTATCTAAGGTGGGCACTGTGTCCACCTGGTTATTACCAGAGCTGGCATATTGGAGTCCG 1012
Query 479 TGTCAAGACCTCGAAGAAACTCGTTGCTTTCATCAGTGGT-GTGCCAGCAAGAATCAGGG 537
||||||||||| ||||||||| ||||||||||| |||| | |||| ||||||||||||
Sbjct 1013 CGTCAAGACCTCCAAGAAACTCATTGCTTTCATCTGTGGCAG-GCCAACAAGAATCAGGG 1071
Query 538 TGCGTGGTGAGGTTGTTAAAGTTGCAAAAATCAATCTC-TTGTGTGTTCACAAGAAGCTC 596
|||||| ||||||||||||| | || || ||||| || |||||||||||||||||||||
Sbjct 1072 TGCGTGATGAGGTTGTTAAAATGGCGAAGGTCAAT-TCCTTGTGTGTTCACAAGAAGCTC 1130
Query 597 AGGTATAAGGGACTTGCATTTT-TCATGATGAAGGAGGTGACTAGAAGGGTTCACTTGCA 655
|||| |||||||||||| | | ||||||| |||||| |||||||||||||| | |||||
Sbjct 1131 AGGTCTAAGGGACTTGC-TCCTCTCATGATCAAGGAGTTGACTAGAAGGGTTAAGTTGCA 1189
Query 656 GAATGTATGGCAAGCGGCTTATGCCACATCTTATATACTTTCTAGACCAGTCACCACCTG 715
|||| ||||||||||||||||| || || | ||||||||||||||||||| |||||| |
Sbjct 1190 GAATATATGGCAAGCGGCTTATACCTCAAGTCATATACTTTCTAGACCAGTTACCACCAG 1249
Query 716 CCTATACTCTGG-CAGAATGTTGAACCCGAGGAAGCTAATGGATGTTGGGTTAACAATGC 774
| | ||| || ||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1250 TCGAGACTG-GGTCAGAATGTTGAACCCGAAGAAGCTAATCGATGTTGGGTTAACAAGGC 1308
Query 775 TTCGTGAAAGAATGACAATGAGCATGG-CCATCAAATTATACAAGTTACCAGATGCACCA 833
||||||| |||||||||||||||| || || ||||| | ||||||||||||||||||||
Sbjct 1309 TTCGTGACAGAATGACAATGAGCA-GGACCGTCAAACTCTACAAGTTACCAGATGCACCG 1367
Query 834 ATCACTCCTGGATTTAGGGAAATGGAGAGACGTGATGTCCCTGCTGTTACAGAGTTGCTC 893
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1368 ATCACTCCTGGATTTAGGGAAATGGAGCGACGTGATGTCCCTGCTGTTACAGCGTTGCTC 1427
Query 894 AGGAACTACCTTTGCCAGTTTGGAGTTGCGATTGACTTTGATGAAAACGATGTCAGGCAC 953
|||||||||||| ||||||||| |||||||| |||||||||||| |||||||||| ||||
Sbjct 1428 AGGAACTACCTTAGCCAGTTTGCAGTTGCGACTGACTTTGATGACAACGATGTCAAGCAC 1487
Query 954 TGGCTTCTCCCAAGGGAACATGTCGTCTACAGTTACTTAGTAGTAAGCCCTGAAACTCAT 1013
|||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||
Sbjct 1488 TGGCTTCTCCCAAGGGAAAATATTGTCTACAGTTACGTAGTAGTAAGCCCTGAAACTCAT 1547
Query 1014 GACGTCACTGACTTCTGCAGCTTCTACAGTGTCC-CTGCAACTATCACC---AACCGGAA 1069
|| |||||||||||||||||||||| || | ||| || ||||||| || ||||||||
Sbjct 1548 GATGTCACTGACTTCTGCAGCTTCTGCAAT-TCCTCTATAACTATCCCCGGTAACCGGAA 1606
Query 1070 ATACAAAACAGTGGAATGTGCGTATTCTTACTACAATGTAGCAACAGTGACCTCGTTA-C 1128
||||| || |||||||||| ||| ||| || ||||||||| ||| ||||||||||| |
Sbjct 1607 ATACACGACCCTGGAATGTGCTTATGCTTGCTGCAATGTAGCGACACTGACCTCGTTATC 1666
Query 1129 CCAAGCTGATGAATGATGCACTAATTGTCTCTAAGCAAAAAGGTTTTGATGTGTTCTACG 1188
||| |||| |||||||||| ||||| |||||||||||||||||||| |||||||| || |
Sbjct 1667 CCA-GCTGGTGAATGATGCCCTAATAGTCTCTAAGCAAAAAGGTTTCGATGTGTTTTATG 1725
Query 1189 CGTTGGATGTGATGCAGAATGAGACTTTCTTGAAAGAGCTGAGGTTT-AGTGCCAAAAAT 1247
| | |||||||||||||||||||| ||||||||||||| |||||||| | | ||| | |
Sbjct 1726 CCTCGGATGTGATGCAGAATGAGAGTTTCTTGAAAGAGTTGAGGTTTTA-T-CCACTA-T 1782
Query 1248 -TC-ACCGTTGCACTACTATCTCTACAACTACCGTTTGAGAAATGCATTGAAGACATCAG 1305
|| || || |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1783 GTCGACAGTCGCACTACTATCTCTACAATTACCGTTTGAGAAATGCATTGAAGCCATCAG 1842
Query 1306 AAATTGGGCTTGTT-TTCTAGTGCTGTTAACACTACTG 1342
|| |||||||| || || |||| |||||| || ||||
Sbjct 1843 AACTTGGGCTTATTCTT-TAGTTTTGTTAAAACCACTG 1879
> AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase
| chr5:23074867-23076901 FORWARD LENGTH=1720
Length=1720
Score = 1051 bits (569), Expect = 0.0
Identities = 1034/1252 (83%), Gaps = 57/1252 (5%)
Strand=Plus/Plus
Query 102 AAGGACGATACTTCACGTGG-AACCATAGTTGGAAGGTTACTGCATTGCCAGTGT-TG-T 158
||||| |||||||| | ||| |||||||||| ||||||| | | ||| || ||| |
Sbjct 345 AAGGATGATACTTCGC-TGGAAACCATAGTTCGAAGGTTCCAGGATT--CAATGTCAGAG 401
Query 159 TCAAAGACTCATAGTGGGTTCTGGGAGACTCAACCTG-TGGCGCAGATAAAAGATATCGG 217
|||||||||||| |||||||||||||||||||| ||| |||| | || ||||| ||
Sbjct 402 GCAAAGACTCATA---AGTTCTGGGAGACTCAACCTGTTGG-GCAGTTTAAGGATATTGG 457
Query 218 AGACACGAGTTCGCCTGAAGGCCCAATTGAACCCGCAACTTTGGTATCTGAGGTCAAGCC 277
|| ||||||| ||||||||| || ||||| || |||||| |||||||||| ||||
Sbjct 458 GGATACGAGTTTGCCTGAAGGTCCGATTGAGCCTGCAACTCCATTATCTGAGGTTAAGCA 517
Query 278 AGAGCCGTATAACCTTCCTGGTCAATTT--GAATGGACCATATGCGATATGAACTCTGAT 335
||||||||| ||||||||| || ||| || ||||| | ||| |||||||||||||||
Sbjct 518 AGAGCCGTACAACCTTCCT--TCTGTTTACGAGTGGACGACATGTGATATGAACTCTGAT 575
Query 336 GATATGTGTTCAGAGATGTACAACTTTCTCAAGGAA-AACTATCCTGATGACG--GACA- 391
||||||||||||||| | |||||| |||||||| || |||||| ||| || | || |
Sbjct 576 GATATGTGTTCAGAGGTATACAACCTTCTCAAG-AACAACTATGTTGAGGATGATGAGAA 634
Query 392 TAGGTTCAAGGTTGA-TTACTCCAAGGAGTTTCTAAAGTGGGCATTGTGTCCGCCTGGTT 450
|| ||||| |||| | |||||||||||||||||||| ||||||| | |||| || ||||
Sbjct 635 TATGTTCA-GGTTCAATTACTCCAAGGAGTTTCTAAGGTGGGCACTACGTCCACCGGGTT 693
Query 451 ATTATCAGAACTGGCATATTGGAGTCCGTGTCAAGACCTCGAAGAAACTCGTTGCTTTCA 510
|||| |||| ||||||||||||||| || | |||||| ||||||||||||||||||||||
Sbjct 694 ATTACCAGAGCTGGCATATTGGAGTTCGAGCCAAGACTTCGAAGAAACTCGTTGCTTTCA 753
Query 511 TCAGTGGTGTGCCAGCAAGAATCAGGGTGCGTGGTGAGGTTGTTAAAGTTGCAAAAATCA 570
|||| || ||||||||||||||||||||||||| ||||||||||||| | ||| | ||||
Sbjct 754 TCAGCGGCGTGCCAGCAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCAGAGATCA 813
Query 571 ATCTCTTGTGTGTTCACAAGAAGCTCAGGTATAAG-GGACTTGCATTTT-TCATGATGAA 628
|| ||||||||||||||||||||||||||| |||| || || || | | ||||||| ||
Sbjct 814 ATTTCTTGTGTGTTCACAAGAAGCTCAGGTCTAAGAGG-CTCGC-TCCTGTCATGATCAA 871
Query 629 GGAGGTGACTAGAAGGGTTCACTTGCAGAATGTATGGCAAGCGGCTTATGCCACATCT-T 687
||||||||||||||||||||||||| |||| |||||||||| |||||| | || |
Sbjct 872 GGAGGTGACTAGAAGGGTTCACTTGGAGAACATATGGCAAGCAGCTTATACTGCAGGAGT 931
Query 688 ATATACTTTCTAGACCAGTCACCACCTGCCTATACTCTGGCAGAA-TG-TTGAACCCGAG 745
||| ||| ||| |||| |||||||||| | ||||| |||| | | ||||||||||
Sbjct 932 -TATCCTTCCTACACCAATCACCACCTGTCAATACT--GGCACAGGTCATTGAACCCGAA 988
Query 746 GAAGCTAATGGATGTTGGGTTAACAATGCTTCGTGAAAGAATGACAATGAGCATGG-CCA 804
||||||||| ||||||||||| ||| |||| ||| |||||||||||||||| | |||
Sbjct 989 GAAGCTAATTGATGTTGGGTTTTCAAGGCTTGGTGCGAGAATGACAATGAGCA-GAACCA 1047
Query 805 TCAAATTATACAAGTTACCAGATGCACCAATCACTCCTGGATTTAGGGAAATGGAGAG-A 863
||||| | |||||||||||||||||||| |||||||||||||| ||| ||||||| | |
Sbjct 1048 TCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTCAGGAAAATGGA-ACCA 1106
Query 864 CGTGATGTCCCTGCTGTTACA-GAGTTGCTCAGGAACTACCTTTGCCAGTTTGGAGTTGC 922
|| |||||||||||||||||| | |||||| ||||||||||| ||||||||||||| ||
Sbjct 1107 CGCGATGTCCCTGCTGTTACACG-GTTGCTTAGGAACTACCTCAGCCAGTTTGGAGTCGC 1165
Query 923 GATTGACTTTGATGAAAACGATGTC-AGGCACTGGCTTCTCCCAAGGGAACATGTCGTCT 981
|| |||||||||||| || |||||| || || ||||| |||||||| ||| |||||||
Sbjct 1166 GACTGACTTTGATGAGAATGATGTCGAG-CATTGGCTACTCCCAAGAGAAGATGTCGTGG 1224
Query 982 ACAGTTACTTAGTAGTAAGCCCTGAAACTCATGACGTCACTGACTTCTGCAGCTTCTACA 1041
|||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1225 ACAGTTACCTAGTAGAAAGCCCTGAAACTCACGATGTCACTGACTTCTGCAGCTTCTACA 1284
Query 1042 GTGTCCCTGCAACTATCAC-C---AACCGGAAATACAAAACAGTGGAATG-TGCGTATTC 1096
| ||||| |||| ||| | | |||| ||| |||| ||| || || | |||||||||
Sbjct 1285 CTCTCCCTTCAACCATC-CTCGGTAACCCGAACTACACTACATTGAAA-GCTGCGTATTC 1342
Query 1097 TTACTACAATGTAGCAACAGTGACCTCGTTACC-CAAGCTGATGAATGATGCACTAATTG 1155
|||||||||||| || ||| ||||||||| | || ||||||||||||||| |||||||
Sbjct 1343 TTACTACAATGTGGCCACACAGACCTCGTTTCTTCA-GCTGATGAATGATGCGCTAATTG 1401
Query 1156 TCTCTAAGCAAAAAGGTTTTGATGTGTTCTACGCGTTGGATGTGATGCAGAATGAGACTT 1215
|||| |||||||| ||||| ||||||||| ||||||||||||||||||| ||||||| ||
Sbjct 1402 TCTCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGATGCACAATGAGAGTT 1461
Query 1216 TCTTGAAAGAGCTGAGGTTTAGTGCCAAAA-ATTCAC--CGTTGCACTACTATCTCTACA 1272
|||||||||| |||| |||| | |||| | || || | || || |||||||||||||
Sbjct 1462 TCTTGAAAGAACTGAAGTTTGG-GCCAGGAGATGGACAAC-TT-CATTACTATCTCTACA 1518
Query 1273 ACTACCGTTTGAGAAA-TGCATTGAAGACATCAGAAATTGGGCTTGTTTTCT 1323
| |||||||||| ||| ||| |||||| || | ||| | ||||||||| |||
Sbjct 1519 ATTACCGTTTGA-AAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTTCTCT 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5