BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935343
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA... 809 0.0
> AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA:protein
N-myristoyltransferase (NMT), putative, similar to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834;
contains Pfam profiles PF01233: Myristoyl-CoA:protein
N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein
N-myristoyltransferase C-terminal domain; gene
contains a frameshift. This could be a pseudogene or a sequencing
error.; blastp match of 62% identity and 5.1e-121
P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl
transferase {Oryza sativa (japonica cultivar-group)}
| chr2:18265431-18267426 REVERSE LENGTH=1996
Length=1996
Score = 809 bits (438), Expect = 0.0
Identities = 925/1151 (80%), Gaps = 70/1151 (6%)
Strand=Plus/Plus
Query 154 AGTTTAAGGATGT-CGGAGACACGAGTTTGCCTGATGGAGGTCCAGTTGAGCCGGCAACT 212
||||||| ||| | | | ||||||||||||||||| ||| ||| ||||||| ||||||
Sbjct 740 AGTTTAAAGATATCCAG-GACACGAGTTTGCCTGA---AGGCCCAATTGAGCCCGCAACT 795
Query 213 CCATTATCTGAGGTCAAGCAAGAGCCATACAACCTTCCTT-CTC-CTTATGAATGGACCA 270
| |||||||||||||||||||| ||||||||| ||| || || ||||||||||
Sbjct 796 TTGGTGTCTGAGGTCAAGCAAGAGCCGTACAACCTT-CTTGGTCAATT-CGAATGGACCA 853
Query 271 CCTGCGATATGAACTCTGATGATATGTGCTCAGCGGTGTACAACTTTCTCAAGG--AACA 328
||||||||||||||||| |||||||| | || | |||||||||||||||||| ||||
Sbjct 854 TATGCGATATGAACTCTGACGATATGTGTTTAGAGATGTACAACTTTCTCAAGGAAAACA 913
Query 329 GTTTCCTGATAAGAGATATTTGTTCCAGGAAAATTATTCCAGGGAGTTTCTAAGGTGGGC 388
| ||||||| || | | | || || | | || |||| |||| ||||||||||||
Sbjct 914 G--TCCTGAT--GACA-A-CAGATCAAGTATGAGTACTCCAAAGAGTATCTAAGGTGGGC 967
Query 389 ATTGTGTCCACCTGGTTATCACCAGAGCTGGCATATTGGAGTCCGTGCCAAGAACTCGAC 448
| ||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||| |
Sbjct 968 ACTGTGTCCACCTGGTTATTACCAGAGCTGGCATATTGGAGTCCGCGTCAAGACCTCCAA 1027
Query 449 GAAACTCGCTGCTTTTATCAGTGGC-GTGCCAGA-AAGAATTAGGGTGCATGATAAGGTT 506
||||||| |||||| ||| ||||| | |||| | |||||| ||||||| |||| |||||
Sbjct 1028 GAAACTCATTGCTTTCATCTGTGGCAG-GCCA-ACAAGAATCAGGGTGCGTGATGAGGTT 1085
Query 507 GTTGAAATTGCAAAGATC-ACTCTCTTTTGTATTCACAAAAAGCTCAGGTCTAAGAAGGT 565
||| |||| || ||| || | || ||| ||| ||||||| ||||||||||||||| ||
Sbjct 1086 GTTAAAATGGCGAAGGTCAATTC-CTTGTGTGTTCACAAGAAGCTCAGGTCTAAG--GG- 1141
Query 566 GCTTCCTACTGTCATGATCAAGGAAG-TGACTAGAAGGGTTCACTTGCAGAATATATGGC 624
||| || || |||||||||||| || |||||||||||||| | ||||||||||||||||
Sbjct 1142 ACTTGCTCCTCTCATGATCAAGG-AGTTGACTAGAAGGGTTAAGTTGCAGAATATATGGC 1200
Query 625 AAGCGGCTTATAGCTTACCTGC-TAAACGTGCTACACCA-TTAATCACTTGTCAATACTG 682
|||||||||||| || | | | || || | ||| |||| ||| ||| ||| | ||||
Sbjct 1201 AAGCGGCTTATACCTCAAGT-CATATACTTTCTAGACCAGTTAC-CACCAGTCGAGACTG 1258
Query 683 GGTCAGAATGTTGAACCCGATGAAGCTAATGGATGTTAGGTTTTCATGTGCT-CTTGACA 741
|||||||||||||||||||| ||||||||| |||||| |||| || | ||| | |||||
Sbjct 1259 GGTCAGAATGTTGAACCCGAAGAAGCTAATCGATGTTGGGTTAACAAG-GCTTCGTGACA 1317
Query 742 ACACAACGGCAAAGAGACTG-ACAGTCAAACTTTACAATTTACCAGATGCAACAATCACT 800
| | | ||| ||| | | || |||||||| ||||| |||||||||||| | ||||||
Sbjct 1318 G-A-AT-GACAATGAG-CAGGACCGTCAAACTCTACAAGTTACCAGATGCACCGATCACT 1373
Query 801 CCTGGATTTAGGAAAATGGAACAACGTGATATCCCTGCTGTTACAG-GTTTGCTCAGGAA 859
|||||||||||| ||||||| | ||||||| ||||||||||||||| ||| |||||||||
Sbjct 1374 CCTGGATTTAGGGAAATGGAGCGACGTGATGTCCCTGCTGTTACAGCGTT-GCTCAGGAA 1432
Query 860 CTACCTAAGCCAGTTTGGAGTTGCGACTGACTTTGATGAAAACGATATTGAGCACTGGTT 919
|||||| |||||||||| ||||||||||||||||||||| |||||| | |||||||| |
Sbjct 1433 CTACCTTAGCCAGTTTGCAGTTGCGACTGACTTTGATGACAACGATGTCAAGCACTGGCT 1492
Query 920 TCTCCCAAGAGAACATGTCATCTACAGTTACGTAGTAGAAA-CTCATGA--CG--TGAT- 973
||||||||| ||| || | |||||||||||||||||| || | | ||| | ||||
Sbjct 1493 TCTCCCAAGGGAAAATATTGTCTACAGTTACGTAGTAGTAAGCCC-TGAAACTCATGATG 1551
Query 974 -CACTGACTTGTGCAGCTTCTACGCTGTCCAGT-TAACTATCGACGACAATAACCCCAAG 1031
||||||||| |||||||||| | | ||| | |||||||| || ||||| ||
Sbjct 1552 TCACTGACTTCTGCAGCTTCTGCAAT-TCCTCTATAACTATCCCCGG---TAACCGGAAA 1607
Query 1032 --CACGAAACAGTGGAATGTGCTTATTCTTACTACAATGTGGCAACACAGACCTCGTTAC 1089
||||| | |||||||||||||| ||| || |||||| || |||| ||||||||||
Sbjct 1608 TACACGACCC--TGGAATGTGCTTATGCTTGCTGCAATGTAGCGACACTGACCTCGTTA- 1664
Query 1090 TCC-AGCTGATGAAAGATGCGCTAATCGTCTCTAAG-AAAGAAGGTTTTGATGT-TTTCC 1146
||| ||||| |||| ||||| ||||| ||||||||| ||| ||||||| ||||| |||
Sbjct 1665 TCCCAGCTGGTGAATGATGCCCTAATAGTCTCTAAGCAAA-AAGGTTTCGATGTGTTTT- 1722
Query 1147 ACGCTTTGGATGTGATGCACAATGAGTCTTTCTTGAAAGACTTGAAGTTTAAACTTGACA 1206
| || | |||||||||||| |||||| |||||||||||| |||| |||| | | ||
Sbjct 1723 ATGCCTCGGATGTGATGCAGAATGAGAGTTTCTTGAAAGAGTTGAGGTTTTATCC--ACT 1780
Query 1207 AT-TC-ACAGAT-GCACTACTATCTCTACAACTACCGCTTAAGAAGTGCATTGAAGCCAT 1263
|| || |||| | |||||||||||||||||| ||||| || |||| ||||||||||||||
Sbjct 1781 ATGTCGACAG-TCGCACTACTATCTCTACAATTACCGTTTGAGAAATGCATTGAAGCCAT 1839
Query 1264 CAGAGTTTGGG 1274
|||| |||||
Sbjct 1840 CAGAACTTGGG 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5