BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935345
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-m... 1009 0.0
AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA... 983 0.0
> AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase
| chr5:23074867-23076901 FORWARD LENGTH=1720
Length=1720
Score = 1009 bits (546), Expect = 0.0
Identities = 989/1192 (83%), Gaps = 74/1192 (6%)
Strand=Plus/Plus
Query 97 CAAAGACCCATAAGTTCTGGGAGACTCAACCTGTTGCCCAGTTTAAGGATATCGGAGACA 156
||||||| |||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 403 CAAAGACTCATAAGTTCTGGGAGACTCAACCTGTTGGGCAGTTTAAGGATATTGGGGATA 462
Query 157 CGAGTTTGCCTGAAGGCCCAATTGAGCCCGTAACTCCGTTATCTGA-GTTCAAGCAAGAA 215
|||||||||||||||| || |||||||| | |||||| |||||||| ||| ||||||||
Sbjct 463 CGAGTTTGCCTGAAGGTCCGATTGAGCCTGCAACTCCATTATCTGAGGTT-AAGCAAGAG 521
Query 216 CCGTACATCCTTCCTGATGCTCT-CGAGTGGACCACATGCGATATGAACTCTGATGATAT 274
||||||| ||||||| || | | ||||||||| ||||| ||||||||||||||||||||
Sbjct 522 CCGTACAACCTTCCTTCTG-TTTACGAGTGGACGACATGTGATATGAACTCTGATGATAT 580
Query 275 GTGTTCACAGGTGTACAATTTTTTGAAGGAA-AACTATCCT---GATGA-GAGAAGTCCG 329
||||||| |||| ||||| || | || ||| |||||| | ||||| ||||| | |
Sbjct 581 GTGTTCAGAGGTATACAACCTTCTCAA-GAACAACTATGTTGAGGATGATGAGAA-TATG 638
Query 330 TTCAGGGTT-GATTACTCGAGGGAGTTTCTAAGGTGGGCATTATGTCCACCTGGTTATCA 388
|||| |||| ||||||| | ||||||||||||||||||| || ||||||| |||||| |
Sbjct 639 TTCA-GGTTCAATTACTCCAAGGAGTTTCTAAGGTGGGCACTACGTCCACCGGGTTATTA 697
Query 389 CCAGAGCTGGCATATTGGAGTCCGTGTCAAGACCTCGAAGAAACTCGTTGCTTTCATCAG 448
||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||
Sbjct 698 CCAGAGCTGGCATATTGGAGTTCGAGCCAAGACTTCGAAGAAACTCGTTGCTTTCATCAG 757
Query 449 TGGTGTGCCAGCAAGAATCAAAGTGCGTGATGTGGTTGTTAACATGGCAAAGATCGATTT 508
|| |||||||||||||||| |||||||||| ||||||||| |||||| ||||| ||||
Sbjct 758 CGGCGTGCCAGCAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCAGAGATCAATTT 817
Query 509 CTTGTGTGTT-ATCAAGCAATAT-AGGTCTAAG-GGATTTGCTCCTATCCTGATCAAGGA 565
|||||||||| | |||| || | ||||||||| || | |||||| || ||||||||||
Sbjct 818 CTTGTGTGTTCA-CAAG-AAGCTCAGGTCTAAGAGG-CTCGCTCCTGTCATGATCAAGGA 874
Query 566 GGTGACTAGAAGGGTTCATTTGGAGAATATATGGCAAGCGGCTTATACCT-CACTTGATA 624
|||||||||||||||||| |||||||| ||||||||||| ||||||| || || | ||
Sbjct 875 GGTGACTAGAAGGGTTCACTTGGAGAACATATGGCAAGCAGCTTATA-CTGCAGGAGTTA 933
Query 625 TACTTCCTACACCATTCAGCAGTTGCCAATACTGGGGCAGACTC-CTGAACCCTAAGAAG 683
| |||||||||||| ||| || || ||||||||| ||| || ||||||| ||||||
Sbjct 934 TCCTTCCTACACCAATCACCACCTGTCAATACTGGCACAG-GTCATTGAACCCGAAGAAG 992
Query 684 CTAATCGATGTTGGGTATTC-AGAGCTTCGT-CAAAGAATGACAATGAGCAGGGCCGTCA 741
||||| |||||||||| ||| || |||| || | ||||||||||||||||| || |||
Sbjct 993 CTAATTGATGTTGGGTTTTCAAG-GCTTGGTGC-GAGAATGACAATGAGCAGAACCATCA 1050
Query 742 AACTTTACAAGTTACCAGATGCACCGATCACTCCTGGATTTAGGGAAATGGAACGACG-- 799
|||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 1051 AACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTCAGGAAAATGGAACCACGCG 1110
Query 800 -T--CA--G-TG------G-TTGCTCAGGAAATACCTTAGCCAGTTTGGAGTTGCGACTG 846
| | | || | ||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1111 ATGTCCCTGCTGTTACACGGTTGCTTAGGAACTACCTCAGCCAGTTTGGAGTCGCGACTG 1170
Query 847 ACTTTGATGA-AAT-----CGAGCACTGGCTTCTCCCAAGAAAAGATGTCGTCTACAGTT 900
|||||||||| ||| |||||| ||||| ||||||||| |||||||||| ||||||
Sbjct 1171 ACTTTGATGAGAATGATGTCGAGCATTGGCTACTCCCAAGAGAAGATGTCGTGGACAGTT 1230
Query 901 ACTTAGTAGAAA-CTCATGA--CGTCA---T--CACTGACTTCTGCAGCTTCTACGCTGT 952
|| ||||||||| | | ||| | ||| | |||||||||||||||||||||| || |
Sbjct 1231 ACCTAGTAGAAAGCCC-TGAAAC-TCACGATGTCACTGACTTCTGCAGCTTCTACACTCT 1288
Query 953 TCCTTTCA-CAATC-TCTGATAACCCGAAGTACACAACAGTGGAATG-TGCTTACTCTTA 1009
|||| || | ||| || | ||||||||| ||||| ||| || || | ||| || |||||
Sbjct 1289 CCCTT-CAACCATCCTCGG-TAACCCGAACTACACTACATTGAAA-GCTGCGTATTCTTA 1345
Query 1010 CTACAATGTCGCGGAAAC-GACCTCGTTTCC-CAAGCTGATGAATGATGTGCTAATTGTC 1067
||||||||| || | || ||||||||||| || |||||||||||||| ||||||||||
Sbjct 1346 CTACAATGTGGCC-ACACAGACCTCGTTTCTTCA-GCTGATGAATGATGCGCTAATTGTC 1403
Query 1068 TCTAAGAAAAAAGGTTTCGATGTGTTTAACGCGTTGGATGTGATGCACAATAAGAGTTTC 1127
|| ||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1404 TCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGATGCACAATGAGAGTTTC 1463
Query 1128 TTGAAAGAGTTGAAGTTTGATGATCCAGGAGATGCTGCTAAGCTTCACTACTATCTCTAT 1187
|||||||| ||||||||| | |||||||||| | || ||||| |||||||||||
Sbjct 1464 TTGAAAGAACTGAAGTTTGG-G--CCAGGAGATGGA-C-AA-CTTCATTACTATCTCTAC 1517
Query 1188 AATTACCATTTGAGGAGTGCATTGAAGCCATCAGAACTTGGGCTTGTTCTCT 1239
||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||
Sbjct 1518 AATTACCGTTTGAAAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTTCTCT 1569
> AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA:protein
N-myristoyltransferase (NMT), putative, similar to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834;
contains Pfam profiles PF01233: Myristoyl-CoA:protein
N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein
N-myristoyltransferase C-terminal domain; gene
contains a frameshift. This could be a pseudogene or a sequencing
error.; blastp match of 62% identity and 5.1e-121
P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl
transferase {Oryza sativa (japonica cultivar-group)}
| chr2:18265431-18267426 REVERSE LENGTH=1996
Length=1996
Score = 983 bits (532), Expect = 0.0
Identities = 988/1195 (83%), Gaps = 83/1195 (7%)
Strand=Plus/Plus
Query 93 TATTCAAAGACCCATAAGTTCTGGGAGACTCAACCTGTTGCCCAGTTTAAGGATAT-CGG 151
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
Sbjct 697 TATTCAAAGACCCATAAGTTCTGGGAGACTCAACCTGTTGAGCAGTTTAAAGATATCCAG 756
Query 152 AGACACGAGTTTGCCTGAAGGCCCAATTGAGCCCGTAACTCCGTTATCTGAGTTCAAGCA 211
|||||||||||||||||||||||||||||||||| |||| | | |||||| |||||||
Sbjct 757 -GACACGAGTTTGCCTGAAGGCCCAATTGAGCCCGCAACTTTGGTGTCTGAGGTCAAGCA 815
Query 212 AGAACCGTACATCCTTCCTGATGC--TCTCGAGTGGACCACATGCGATATGAACTCTGAT 269
||| ||||||| ||||| || | | | |||| ||||||| ||||||||||||||||||
Sbjct 816 AGAGCCGTACAACCTTCTTGGT-CAAT-TCGAATGGACCATATGCGATATGAACTCTGAC 873
Query 270 GATATGTGTTCACAGGTGTACAATTTTTTGAAGGAAAACTA-TCCTGATGAGAGAAGTCC 328
|||||||||| | || ||||||| ||| | ||||||||| | ||||||| || || |
Sbjct 874 GATATGTGTTTAGAGATGTACAACTTTCTCAAGGAAAAC-AGTCCTGAT--GACAA--CA 928
Query 329 GTTCAGGGT-TGATTACTCGAGGGAGTTTCTAAGGTGGGCATTATGTCCACCTGGTTATC 387
| ||| || ||| ||||| | |||| ||||||||||||| | |||||||||||||||
Sbjct 929 GATCA-AGTATGAGTACTCCAAAGAGTATCTAAGGTGGGCACTGTGTCCACCTGGTTATT 987
Query 388 ACCAGAGCTGGCATATTGGAGTCCGTGTCAAGACCTCGAAGAAACTCGTTGCTTTCATCA 447
||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 988 ACCAGAGCTGGCATATTGGAGTCCGCGTCAAGACCTCCAAGAAACTCATTGCTTTCATCT 1047
Query 448 GTGG-TGTGCCAGCAAGAATCAAAGTGCGTGATGTGGTTGTTAACATGGCAAAGATCGAT 506
|||| | |||| ||||||||| |||||||||| ||||||||| ||||| ||| || ||
Sbjct 1048 GTGGCAG-GCCAACAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCGAAGGTCAAT 1106
Query 507 TTCTTGTGTGTT-ATCAAGCAATAT-AGGTCTAAGGGATTTGCTCCTATCCTGATCAAGG 564
| |||||||||| | |||| || | |||||||||||| |||||||| || |||||||||
Sbjct 1107 TCCTTGTGTGTTCA-CAAG-AAGCTCAGGTCTAAGGGACTTGCTCCTCTCATGATCAAGG 1164
Query 565 AGGTGACTAGAAGGGTTCATTTGGAGAATATATGGCAAGCGGCTTATACCTCACTTGATA 624
|| |||||||||||||| | ||| ||||||||||||||||||||||||||||| | |||
Sbjct 1165 AGTTGACTAGAAGGGTTAAGTTGCAGAATATATGGCAAGCGGCTTATACCTCAAGTCATA 1224
Query 625 TACTTCCTACACCA-TTCAGCAGTTGCCAATACTGGGGCAGACTCCTGAACCCTAAGAAG 683
||||| ||| |||| || | || | | | |||||| |||| | ||||||| ||||||
Sbjct 1225 TACTTTCTAGACCAGTT-ACCACCAGTCGAGACTGGGTCAGAATGTTGAACCCGAAGAAG 1283
Query 684 CTAATCGATGTTGGG-TATTC-AGAGCTTCGTCAAAGAATGACAATGAGCAGGGCCGTCA 741
||||||||||||||| || | || ||||||| | |||||||||||||||||| ||||||
Sbjct 1284 CTAATCGATGTTGGGTTA-ACAAG-GCTTCGTGACAGAATGACAATGAGCAGGACCGTCA 1341
Query 742 AACTTTACAAGTTACCAGATGCACCGATCACTCCTGGATTTAGGGAAATGGAACGACGTC 801
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1342 AACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTTAGGGAAATGGAGCGACGTG 1401
Query 802 A-GT----G--GTT---GC-T--C--AGGAAATACCTTAGCCAGTTTGGAGTTGCGACTG 846
| || | ||| || | | ||||| |||||||||||||||| |||||||||||
Sbjct 1402 ATGTCCCTGCTGTTACAGCGTTGCTCAGGAACTACCTTAGCCAGTTTGCAGTTGCGACTG 1461
Query 847 ACTTTGATGA-AA---T--CGAGCACTGGCTTCTCCCAAG--AAAAGATGTCGTCTACAG 898
|||||||||| || | | ||||||||||||||||||| |||| || | ||||||||
Sbjct 1462 ACTTTGATGACAACGATGTCAAGCACTGGCTTCTCCCAAGGGAAAATAT-T-GTCTACAG 1519
Query 899 TTAC-T--TAGTA-G-----AAACTCATGACGTCATCACTGACTTCTGCAGCTTCTACGC 949
|||| | ||||| | |||||||||| |||| | ||||||||||||||||| ||
Sbjct 1520 TTACGTAGTAGTAAGCCCTGAAACTCATGATGTCA-C--TGACTTCTGCAGCTTCT--GC 1574
Query 950 TGTTCCT-T-TCACAATCTCTGATAACCCGAAGTACACAACAGTGGAATGTGCTTACT-C 1006
||||| | | || ||| | | ||||| ||| ||||| || ||||||||||||| | |
Sbjct 1575 AATTCCTCTATAACTATCCCCGGTAACCGGAAATACACGACCCTGGAATGTGCTTA-TGC 1633
Query 1007 TTACTACAATGTCGCGGAAAC-GACCTCGTT-TCCCAAGCTGATGAATGATGTGCTAATT 1064
|| || |||||| ||| | || ||||||||| ||||| |||| ||||||||| |||||
Sbjct 1634 TTGCTGCAATGTAGCG-ACACTGACCTCGTTATCCCA-GCTGGTGAATGATGCCCTAATA 1691
Query 1065 GTCTCTAAGAAAAAAGGTTTCGATGTGTTTAACGCGTTGGATGTGATGCACAATAAGAGT 1124
||||||||| |||||||||||||||||||| | || | |||||||||||| ||| |||||
Sbjct 1692 GTCTCTAAGCAAAAAGGTTTCGATGTGTTTTATGCCTCGGATGTGATGCAGAATGAGAGT 1751
Query 1125 TTCTTGAAAGAGTTGAAGTTTGATGATCCAGGAGATGCTGCTA-AG-CTTCACTACTATC 1182
|||||||||||||||| |||| | ||||| | || | | | || | ||||||||||
Sbjct 1752 TTCTTGAAAGAGTTGAGGTTT--T-ATCCACTA--TG-T-CGACAGTCG-CACTACTATC 1803
Query 1183 TCTATAATTACCATTTGAGGAGTGCATTGAAGCCATCAGAACTTGGGCTTGTTCT 1237
|||| ||||||| |||||| | |||||||||||||||||||||||||||| ||||
Sbjct 1804 TCTACAATTACCGTTTGAGAAATGCATTGAAGCCATCAGAACTTGGGCTTATTCT 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5