BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935348
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44195.1 | Symbols: | CBF1-interacting co-repressor CIR, N-... 195 6e-49
> AT2G44195.1 | Symbols: | CBF1-interacting co-repressor CIR,
N-terminal;Pre-mRNA splicing factor | chr2:18274806-18275792
FORWARD LENGTH=721
Length=721
Score = 195 bits (105), Expect = 6e-49
Identities = 189/226 (84%), Gaps = 20/226 (9%)
Strand=Plus/Plus
Query 379 TTCCTGGTGCGTTG-TT--TGATGATGATAAGACAAACTTTGCCAATGATTCTTGGCGCA 435
|||||||||||||| || |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 281 TTCCTGGTGCGTTGTTTGATGATGATGATAAGAGACACTCTGCCAATGATTCTTGGCGCA 340
Query 436 AATTCAACTCCGACCCTTTGCTTCTCATCAGGCAGCAAGAGCAGGAGGAAGCTCGCAAAT 495
||||| ||||||||||||||||||||||||||||| |||||||||| || || |
Sbjct 341 AATTCCACTCCGACCCTTTGCTTCTCATCAGGCAGAAAGAGCAGGA--AATCT-G----- 392
Query 496 CTGTAAGTGTTCCCTTTCATTCTTTCGTTACTCCATTCATGTGTCCTGCTTGTGTGTCTG 555
| |||| | || |||| || |||| |||||||||||||||||||||||||||| |||
Sbjct 393 --G-AAGT-T-CC-TTTCTTTATTTCTTTACTCCATTCATGTGTCCTGCTTGTGTTTCTT 446
Query 556 -TG-AGT-GGTTACAGTTTTGGATAGTATTGGATTTCGATTCTGCT 598
|| | |||||| ||||| ||| ||||||||||||| |||||||
Sbjct 447 CTGTAAACGGTTACGGTTTTAGATTGTATTGGATTTCGTTTCTGCT 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5