BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935351
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 739 0.0
> AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18283803-18285837 FORWARD LENGTH=1359
Length=1359
Score = 739 bits (400), Expect = 0.0
Identities = 474/509 (93%), Gaps = 7/509 (1%)
Strand=Plus/Plus
Query 24 ATGAGAATGACCGGTTTCATAGTAGCTGTGATGGTGA-CAGCAGTGATATTCGTC-ATTT 81
||||||||||||||||||||||||||| ||||| | | |||| | ||||||| | | ||
Sbjct 4 ATGAGAATGACCGGTTTCATAGTAGCTATGATGAT-AGCAGCGGCGATATTC-ACTACTT 61
Query 82 GTGTTGATGGAAACGAGTTCTTTGATCACCGCGAAATTAAAGTACTTCGACATTTGAAAC 141
| |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 62 GCGTTGATGGAAACAAGTTCTTTTATCACCGGGAAATTAAAGTACTTCGACATTTGAAAC 121
Query 142 GGTTCAACAAGCCTACTGTTAAATCCATTAAGAGTGAAGATGGAGATGTAATAGATTGTG 201
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GGTTCAACAAGCCTGCTCTTAAATCCATTAAGAGTGAAGATGGAGATGTAATAGATTGTG 181
Query 202 TTCCTATCACTAATCAACCGGCTTTTGATCATCCTTTACTTAAAAACCATACCATCCAGA 261
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 182 TTCCTATCACTAATCAACCAGCTTTTGATCATCATTTACTTAAAAACCATACCATCCAGA 241
Query 262 TGAGACCGAGTTTCTACCCGGTAAGTGATTCTACATACACCAAGAAAGAGGCAAAGGCTA 321
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 242 TGAGACCGAGTTTCTACCCGGTAAGTGATTCTACGTACACCAAGAGGGAGGCAAAGGCTG 301
Query 322 TAACTCAGGTTTGGCACAAGACTGGAGAGTGTCCCAAAAACACTGTTCCAATTAGAAGAA 381
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 302 TAACTCAGGTTTGGCACAAGGCTGGAGAGTGTCCCAAAAACACTGTTCCAATCAGAAGAA 361
Query 382 CAAAGAAAGAAGATCTTTTAAGACCAAAATCCATCAGGAGTTTTGGGAGAAAGTCACATC 441
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 CAAAGAAAGAAGATCTCTTGAGACCAAAATCCATCAGGAGTTTTGGGAGAAAGTCTCATC 421
Query 442 AAAGCATCCCACGAACTACAACCTTTGATCCAACATTAGGTCATCAGTACAC-CTTGATG 500
||||||| ||| |||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 422 AAAGCATTCCAAGAACTACAACCTTTGATCCAACATTAGGTCATCAGTACGCGCTA-ATG 480
Query 501 GGTGTGAGGAATGGAAAATTT-ATGGGAC 528
|||||||| |||||||||||| |||||||
Sbjct 481 GGTGTGAGAAATGGAAAATTTTATGGGAC 509
Score = 344 bits (186), Expect = 7e-94
Identities = 224/241 (93%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 531 GGAAACTGGTGGCTTAGGGTCAATGAAAAGGACATTATTGGGTACTGGCCAGGCTCGTTG 590
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 844 GGAAACTGGTGGCTTAGAGTCAATGAAAAAGACGTTATTGGGTACTGGCCAGGCTCGTTG 903
Query 591 TTCAGTTCTCTAGGAAGAGAAGCTACCAGAGTTGAATGGGGAGGCGAAATCATTAACTCG 650
|||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 904 TTCAATTCTCTAGGAAGAGAAGCTACGAGAGTTGAATGGGGAGGTGAAATCATTAACTCA 963
Query 651 AAGACCGGTGGGAGACACACAACCACAGATATGGGAAGTGGGCATTTTGCAGACGAAGGT 710
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 964 AAGACCGGTGGGAGACACACTACCACAGATATGGGAAGTGGGCATTTTGCAGATGAAGGT 1023
Query 711 TTTAAGAAAGCAAGCTATGTCAGAATTCAGAAATCTTAAGATAGTTGATGGAACCAATAC 770
|||||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 1024 TTTAAGAAAGCAAGCTATTTCAG------GAA-TCTTAAGATAGTTGATGGAACCAATAC 1076
Query 771 T 771
|
Sbjct 1077 T 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5