BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935358 Length=1433 Score E Sequences producing significant alignments: (Bits) Value AT2G44280.1 | Symbols: | Major facilitator superfamily protein... 2327 0.0 AT3G60070.1 | Symbols: | Major facilitator superfamily protein... 1260 0.0 AT3G04485.1 | Symbols: | other RNA | chr3:1198114-1200104 FORW... 209 5e-53 > AT2G44280.1 | Symbols: | Major facilitator superfamily protein | chr2:18301350-18304284 REVERSE LENGTH=1959 Length=1959 Score = 2327 bits (1260), Expect = 0.0 Identities = 1379/1437 (96%), Gaps = 5/1437 (0%) Strand=Plus/Plus Query 1 TCTCTTTTGCAAACAATTGGTTGATGACGTCATCGGTTACTGTCGGAAT-G--GAAGAAG 57 ||||||||| |||| ||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct 335 TCTCTTTTGAAAACGATTAGTTGATGACGTCATCGGTTATTGTCGGAATGGAAGAAGAAG 394 Query 58 AAGAAGATCCATCGACAAAACCACTTGGAAGATTGTCGGTGTTCTATTATGGAGTTGGAC 117 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 395 AAGAAGATCCATCGACAAAACCACTTGGAAGATTGTCTGTGTTCTATTATGGAGTTGGAC 454 Query 118 ATATGCTTAATGACATTACTGCTTCTTGTTGGTTTACTTACCTCCTCTTGTTTTTAACCC 177 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 455 ATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCTCTTGTTTTTAACCC 514 Query 178 AAATTGGTCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATG 237 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 AAATTGGCCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATG 574 Query 238 GTTTTGCTACTATCTTCATTGGTGAATTGATTGATAGATTTGGGCATTTCAAAATTTGGC 297 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 575 GTTTTGCTACAATCTTCATCGGTGAATTGATTGATAGATTTGGGCATTTCAAAATTTGGC 634 Query 298 ATGCTGCAGGAT-CTCTATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTG 356 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 ATGCTGCAGGATCCT-TATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTG 693 Query 357 CCTTGTTCACTCCTCCATAGTAACTCCTCAACTATCGAAACATTATCGTATTGCATGTTT 416 ||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||| Sbjct 694 CCTTGTTCACTCCTCCATAATAACTCTTCAACTATCGAAACATTATCGTACAGTATGTTT 753 Query 417 GCAGCTATCTTCAATGTAGGATGGGCTGCTACTCAGGTTTCTCACATGGCTATAGTTAAT 476 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct 754 GCAGCTATCTTCAATATTGGATGGGCTGCTACTCAGGTTTCTCACATGGCTATGGTTAAT 813 Query 477 TGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGC 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 TGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGC 873 Query 537 ATGGTTGCTAACTTAGGCTTATACGCGATTGCTTTAGTTGTATTTGGTGTTAGCGAGGCC 596 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 874 ATGGTTGCTAATTTAGGCTTATACGCTATTGCTTTAGTTGTATTTGGTGTTAGCGAGGCC 933 Query 597 GTGACAAAAGAAAATACCGAAACTCAGTATCGTTGGATTGCTTATTCATCCATCACCGTT 656 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 934 GTGACAAAAGAAAATACCGAATCTCAGTATCGTTGGATTGCTTATTCATCCATCACCGTT 993 Query 657 GGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGGATGAAGATAAAT 716 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 994 GGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGGCTGAGGATAAAT 1053 Query 717 TTAAGAGAGACTAGCCGATCAAGAATACCATGGTCTTATTGGTTCCGTAAAATTCTATAC 776 ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 CTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTATTGGTTCCGTAAAATTCTATAC 1113 Query 777 TATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGGCATAT 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 TATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGGCATAT 1173 Query 837 CTTGCATTCTTTATTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGATTCCC 896 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 CTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGATTCCT 1233 Query 897 GCAATAATCTACATCTGCAGCTTCGTTGTATCGGTTATGCTTCAGGAGATTCCTTGGAAT 956 |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1234 GCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAGGAGATTCCTTGGAAT 1293 Query 957 GGAAAACGCCTCAAGGCATATTATTGTGCGGGTGGTATTATTTGGATATTCTGCGGTATA 1016 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1294 GGAAAACGCCTCAAGGCATATTATTGTGCTGGTGGTATTATTTGGATATTCTGCGGTATA 1353 Query 1017 TCAATCCTCTTATTGCCCAGAAGCATTAACTCGTACATGTATGCGATCTCTGTCTTTATC 1076 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1354 TCAATACTCTTATTGCCCAGAAGCATTAACTCTTACATGTATGCGATCTCTGTCTTTATC 1413 Query 1077 GGCATCGCAAATGCATTAATGCTGGTGACAGCAATTAGTATGCAGAGTGTGTTGATTGGT 1136 ||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 1414 GGCATCGCAAATGCAGTAATGTTGGTGACATCAATTAGTATGCAGAGTGTCTTGATTGGT 1473 Query 1137 TCGGAACTCGGTGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCA 1196 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1474 TCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCA 1533 Query 1197 TGTGGGCTTGCCTTATATGTTCTTCAGTCACATCAAGGCACTTCACCAAAGGTTGATGTA 1256 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1534 TGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGGCACTTCACCAAAGGTTGACGTA 1593 Query 1257 AACATCAAAGAATATTTTTACTTCTCGGTAACAAGATATGGGTTAGGACTTGTTCCAGCT 1316 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1594 AACATCAAAGAATATTTTTACTTCTCGGTGACAAGATATGGGTTAGGACTTGTTCCAGCT 1653 Query 1317 GTTTGCTCGCTTGTTGGAGTTGTTGTAACATATTTTATGGAACTCGATAGCACAATTCTA 1376 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1654 GTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTATGGAACTCGATAGCACGATTCTA 1713 Query 1377 AAGCCTCTGTGCCAACCACTACTACTAGAATGAAAAGAAGGAAGATACGCAACGCTT 1433 ||||||||||| ||||| |||||||||||||||| |||| ||||| || ||| |||| Sbjct 1714 AAGCCTCTGTGTCAACCGCTACTACTAGAATGAACAGAAAGAAGAAACACAATGCTT 1770 > AT3G60070.1 | Symbols: | Major facilitator superfamily protein | chr3:22183243-22186329 REVERSE LENGTH=1895 Length=1895 Score = 1260 bits (682), Expect = 0.0 Identities = 1130/1342 (84%), Gaps = 47/1342 (4%) Strand=Plus/Plus Query 50 GGAAGAAGAAGAAGATCCA-TCGACAAAA-CCACTTGGAAGATTGTCGGTGTTCTAT-TA 106 ||||| || || |||||| || |||||| ||| ||||||||| ||| || |||| | || Sbjct 199 GGAAG-TGAGGAGGATCCATTC-ACAAAACCCA-TTGGAAGATGGTCTGTCTTCT-TCTA 254 Query 107 TGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTTACTTACCTCCTCTT 166 |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 255 TGGAGTAGGGCATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTCCTCCT 314 Query 167 GTTTTTAACCCAAATTGGTCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCA 226 || || |||||||||||||||||||| || ||||| || ||||| ||||||||||| || Sbjct 315 ATTCTTGACCCAAATTGGTCTCTCCCCTAGAGATGCAGCCATTGTTATGCTCTCTGGCCA 374 Query 227 AGTTGCTGATGGTTTTGCTACTATCTTCATTGGTGAATTGATTGATAGATTTGGGCATTT 286 ||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||| Sbjct 375 AGTTGCTGATGCATTTGCTACTATCTTCACTGGTGAATTGATTGATAGGTTTGGACATTT 434 Query 287 CAAAATTTGGCATGCTGCAGGATC-TCTATTAGTTGCTATCTCATTTTCCTCTGTTTTTG 345 ||| |||||||||||||||||||| | || | ||||| ||||| |||||||| ||||||| Sbjct 435 CAAGATTTGGCATGCTGCAGGATCAT-TACTGGTTGCAATCTCGTTTTCCTCCGTTTTTG 493 Query 346 GCGGTTGTTTGCCTTGTTC-ACTCCTCCATAGTAACTCCTCAACTA-TCGAAACATTATC 403 | |||||| |||||||||| | ||||||||| |||| | ||| | | ||||| || || Sbjct 494 GAGGTTGTCTGCCTTGTTCGA-TCCTCCATAACGACTCTTTAAC-ACTTGAAACCTTCTC 551 Query 404 GTATTGCATGTTTGCAGCTATCTTCAATGTAGGATGGGCTGCTACTCAGGTTTCTCACAT 463 || | |||||||||||||| || || | ||||||||||||||||| ||||| || || Sbjct 552 CTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCAAGTTTCCCATAT 611 Query 464 GGCTATAGTTAATTGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCG 523 |||||| |||||||| ||| ||||||| |||||||||||||| || |||||||||| || Sbjct 612 GGCTATGGTTAATTGTATTTCATTGAACTCAACAAGCAGAGTTGCTTTAACAAGCTCTCG 671 Query 524 TAATGCGTTTAGC-ATGGTTGCTAA-CTTAGGCTTATACGCGATTGCTTTAGTTGTATTT 581 ||| ||||||| | ||||||||||| ||| |||||||| |||||||||||||| ||||| Sbjct 672 TAACGCGTTTA-CTATGGTTGCTAATCTT-GGCTTATATGCGATTGCTTTAGTAGTATTC 729 Query 582 GGTGTTAGCGAGGCCG-TGACAAAAGAAAATACCGAAACTCAGTATCGTTGGATTGCTTA 640 ||||||| |||| | | |||||||| ||||||||||||||||||| |||||||| || Sbjct 730 GGTGTTATTAAGGCTGGTT-CAAAAGAAGATACCGAAACTCAGTATCGCTGGATTGCATA 788 Query 641 TTCATCCATCACCGTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACC 700 |||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || || Sbjct 789 TTCATCTATCACAATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAAGAGCC 848 Query 701 AAGGATGAAGATAAATTT-AAGAGAGACTAGCCGATCAAGAATACCATGG-TCTTATTGG 758 |||| ||| |||| |||| || ||| ||||||||| | |||||||| ||| ||| ||||| Sbjct 849 AAGGCTGAGGATAGATTTGAA-AGAAACTAGCCGAGCGAGAATACCGTGGGTCT-ATTGG 906 Query 759 TTCCGTAAAATTCTATACTATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTG 818 ||||| |||||||| |||||||||||||| |||||||| |||||||||||| |||||||| Sbjct 907 TTCCGGAAAATTCTGTACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATTAGTATTG 966 Query 819 AATGTTTCACAGGCATATCTTGCATTCTTTATTATTGATGATTTGCAAATGGCTCAATCT 878 |||||||| |||||||||||||| |||||| |||| |||||||||||||||| |||||| Sbjct 967 AATGTTTCTCAGGCATATCTTGCGTTCTTTGTTATCGATGATTTGCAAATGGATCAATCC 1026 Query 879 GCTAAAGCTCTGATTCCCGCAATAATCTACATCTGCAGCTTCGTTGTATCGGTTATGCTT 938 ||||||||| || |||| ||||| ||||| ||||||||||| |||||||||||| ||||| Sbjct 1027 GCTAAAGCTTTGGTTCCTGCAATTATCTATATCTGCAGCTTTGTTGTATCGGTTCTGCTT 1086 Query 939 CAGGAGATTCCTTGGAATGGAAAACGCCTCAAGGCATATTATTGTGCGGGTGGTATTATT 998 ||||||||||| ||||| || |||||| | ||||| |||||| || |||||||| ||| Sbjct 1087 CAGGAGATTCCATGGAACGGGAAACGCTTGAAGGCGTATTATACAGCTGGTGGTATAATT 1146 Query 999 TGGATATTCTGCGGTATATCAATCCT-CTTATTGCCCAGA-AGCATTAACT-CGTACATG 1055 ||||||||||| ||| | |||| || || |||||| ||| | ||| || | | | |||| Sbjct 1147 TGGATATTCTGTGGTGCAGCAATTCTTCT-ATTGCCTAGAGA-CAT-AAGTTCTTTCATG 1203 Query 1056 TATGCGATCTCTGTCTTTATCGGCATCGCAAATGCATTAATGCTGGTGACAGCAATTAGT 1115 |||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| ||| Sbjct 1204 TATGCGATATCTGTCTTTATCGGCATCGCGAATGCATTAATGATGGTAACAGCAATCAGT 1263 Query 1116 ATGCAGAGTGTGTTGATTGGTTCGGAACTCGGTGGATGTGC-TTTCGTTTGTGGGTCATT 1174 ||||||||||||||| ||||| | ||| ||||||| || || ||| ||||| || || || Sbjct 1264 ATGCAGAGTGTGTTGGTTGGTGCAGAAGTCGGTGGTTGCGCATTT-GTTTGCGGCTCGTT 1322 Query 1175 AAGCTTCTTAGACAAAATGTCATGTGGGCTTGC-CTTATATGTTCTTCAGTCACATCAAG 1233 |||||||||||||| ||||| ||||| ||||| || |||||||||||||||||| ||| Sbjct 1323 GAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCT-ATATGTTCTTCAGTCACACCAAA 1381 Query 1234 GC-ACTTCACCAA-AGGTTGATGTAAACATCAAAGAATAT--T-TTTAC-TTCTCGGTAA 1287 | |||||||| | ||| | |||||| ||| || | | ||||| || || || | Sbjct 1382 -CTACTTCACCTAGAGGCCAAC-TAAACAACAACCAACAAAGTGTTTACCTT-TCAGTTA 1438 Query 1288 CAAGATATGGGTTAGGACTTGTTCCAGCTGTT-TGCTCGCTTGTTGGAGTTGTTGTAACA 1346 ||||||| || ||||| ||||||||||| || |||||| ||||||| || | |||||| Sbjct 1439 CAAGATACGGTTTAGGTCTTGTTCCAGCA-TTGTGCTCGTTTGTTGGTGTCGCTGTAACG 1497 Query 1347 TAT-TTTATGGAACTCGATAGC 1367 | | |||||||| ||||| ||| Sbjct 1498 T-TCTTTATGGAGCTCGA-AGC 1517 > AT3G04485.1 | Symbols: | other RNA | chr3:1198114-1200104 FORWARD LENGTH=878 Length=878 Score = 209 bits (113), Expect = 5e-53 Identities = 183/214 (86%), Gaps = 16/214 (7%) Strand=Plus/Plus Query 1232 AGGCACTTCACCAAAGGTTGATGTAAACATCAAA-GAATA-TTTTTACTTCTCGGTAACA 1289 |||||||||||| ||||| | || ||||||||| | ||| ||||||||||| ||| ||| Sbjct 486 AGGCACTTCACCGAAGGTCG-TG--AACATCAAACG-ATATTTTTTACTTCTTGGTGACA 541 Query 1290 AGATATGGGTTAGGACTTGTTCCAGCT-------G-T-T-TGCTCGCTTGTTGGAGTTGT 1339 | |||| ||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 542 GGGTATGTGTTAGGACTTGTTCCAGCTCAGACCAGCTCTATGCTCGCTTGTTGGAGTTGT 601 Query 1340 TGTAACATATTTTATGGAACTCGATAGCACAATTCTAAAGCCTCTGTGCCAACCACTACT 1399 |||||||||||||||||| ||| |||||||||||||| ||||| |||| ||||| ||| | Sbjct 602 TGTAACATATTTTATGGATCTCCATAGCACAATTCTATAGCCTTTGTGTCAACCGCTATT 661 Query 1400 ACTAGAATGAAAAGAAGGAAGATACGCAACGCTT 1433 ||||||||||| |||||||||||||||||||||| Sbjct 662 ACTAGAATGAACAGAAGGAAGATACGCAACGCTT 695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70632166815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5