BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935358
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44280.1 | Symbols: | Major facilitator superfamily protein... 2327 0.0
AT3G60070.1 | Symbols: | Major facilitator superfamily protein... 1260 0.0
AT3G04485.1 | Symbols: | other RNA | chr3:1198114-1200104 FORW... 209 5e-53
> AT2G44280.1 | Symbols: | Major facilitator superfamily protein
| chr2:18301350-18304284 REVERSE LENGTH=1959
Length=1959
Score = 2327 bits (1260), Expect = 0.0
Identities = 1379/1437 (96%), Gaps = 5/1437 (0%)
Strand=Plus/Plus
Query 1 TCTCTTTTGCAAACAATTGGTTGATGACGTCATCGGTTACTGTCGGAAT-G--GAAGAAG 57
||||||||| |||| ||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct 335 TCTCTTTTGAAAACGATTAGTTGATGACGTCATCGGTTATTGTCGGAATGGAAGAAGAAG 394
Query 58 AAGAAGATCCATCGACAAAACCACTTGGAAGATTGTCGGTGTTCTATTATGGAGTTGGAC 117
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 395 AAGAAGATCCATCGACAAAACCACTTGGAAGATTGTCTGTGTTCTATTATGGAGTTGGAC 454
Query 118 ATATGCTTAATGACATTACTGCTTCTTGTTGGTTTACTTACCTCCTCTTGTTTTTAACCC 177
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 455 ATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCTCTTGTTTTTAACCC 514
Query 178 AAATTGGTCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATG 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAATTGGCCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATG 574
Query 238 GTTTTGCTACTATCTTCATTGGTGAATTGATTGATAGATTTGGGCATTTCAAAATTTGGC 297
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GTTTTGCTACAATCTTCATCGGTGAATTGATTGATAGATTTGGGCATTTCAAAATTTGGC 634
Query 298 ATGCTGCAGGAT-CTCTATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTG 356
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 ATGCTGCAGGATCCT-TATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTG 693
Query 357 CCTTGTTCACTCCTCCATAGTAACTCCTCAACTATCGAAACATTATCGTATTGCATGTTT 416
||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||
Sbjct 694 CCTTGTTCACTCCTCCATAATAACTCTTCAACTATCGAAACATTATCGTACAGTATGTTT 753
Query 417 GCAGCTATCTTCAATGTAGGATGGGCTGCTACTCAGGTTTCTCACATGGCTATAGTTAAT 476
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 754 GCAGCTATCTTCAATATTGGATGGGCTGCTACTCAGGTTTCTCACATGGCTATGGTTAAT 813
Query 477 TGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGC 873
Query 537 ATGGTTGCTAACTTAGGCTTATACGCGATTGCTTTAGTTGTATTTGGTGTTAGCGAGGCC 596
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 874 ATGGTTGCTAATTTAGGCTTATACGCTATTGCTTTAGTTGTATTTGGTGTTAGCGAGGCC 933
Query 597 GTGACAAAAGAAAATACCGAAACTCAGTATCGTTGGATTGCTTATTCATCCATCACCGTT 656
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 934 GTGACAAAAGAAAATACCGAATCTCAGTATCGTTGGATTGCTTATTCATCCATCACCGTT 993
Query 657 GGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGGATGAAGATAAAT 716
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 994 GGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGGCTGAGGATAAAT 1053
Query 717 TTAAGAGAGACTAGCCGATCAAGAATACCATGGTCTTATTGGTTCCGTAAAATTCTATAC 776
||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTATTGGTTCCGTAAAATTCTATAC 1113
Query 777 TATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGGCATAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGGCATAT 1173
Query 837 CTTGCATTCTTTATTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGATTCCC 896
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 CTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGATTCCT 1233
Query 897 GCAATAATCTACATCTGCAGCTTCGTTGTATCGGTTATGCTTCAGGAGATTCCTTGGAAT 956
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1234 GCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAGGAGATTCCTTGGAAT 1293
Query 957 GGAAAACGCCTCAAGGCATATTATTGTGCGGGTGGTATTATTTGGATATTCTGCGGTATA 1016
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1294 GGAAAACGCCTCAAGGCATATTATTGTGCTGGTGGTATTATTTGGATATTCTGCGGTATA 1353
Query 1017 TCAATCCTCTTATTGCCCAGAAGCATTAACTCGTACATGTATGCGATCTCTGTCTTTATC 1076
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1354 TCAATACTCTTATTGCCCAGAAGCATTAACTCTTACATGTATGCGATCTCTGTCTTTATC 1413
Query 1077 GGCATCGCAAATGCATTAATGCTGGTGACAGCAATTAGTATGCAGAGTGTGTTGATTGGT 1136
||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1414 GGCATCGCAAATGCAGTAATGTTGGTGACATCAATTAGTATGCAGAGTGTCTTGATTGGT 1473
Query 1137 TCGGAACTCGGTGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCA 1196
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCA 1533
Query 1197 TGTGGGCTTGCCTTATATGTTCTTCAGTCACATCAAGGCACTTCACCAAAGGTTGATGTA 1256
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1534 TGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGGCACTTCACCAAAGGTTGACGTA 1593
Query 1257 AACATCAAAGAATATTTTTACTTCTCGGTAACAAGATATGGGTTAGGACTTGTTCCAGCT 1316
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1594 AACATCAAAGAATATTTTTACTTCTCGGTGACAAGATATGGGTTAGGACTTGTTCCAGCT 1653
Query 1317 GTTTGCTCGCTTGTTGGAGTTGTTGTAACATATTTTATGGAACTCGATAGCACAATTCTA 1376
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1654 GTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTATGGAACTCGATAGCACGATTCTA 1713
Query 1377 AAGCCTCTGTGCCAACCACTACTACTAGAATGAAAAGAAGGAAGATACGCAACGCTT 1433
||||||||||| ||||| |||||||||||||||| |||| ||||| || ||| ||||
Sbjct 1714 AAGCCTCTGTGTCAACCGCTACTACTAGAATGAACAGAAAGAAGAAACACAATGCTT 1770
> AT3G60070.1 | Symbols: | Major facilitator superfamily protein
| chr3:22183243-22186329 REVERSE LENGTH=1895
Length=1895
Score = 1260 bits (682), Expect = 0.0
Identities = 1130/1342 (84%), Gaps = 47/1342 (4%)
Strand=Plus/Plus
Query 50 GGAAGAAGAAGAAGATCCA-TCGACAAAA-CCACTTGGAAGATTGTCGGTGTTCTAT-TA 106
||||| || || |||||| || |||||| ||| ||||||||| ||| || |||| | ||
Sbjct 199 GGAAG-TGAGGAGGATCCATTC-ACAAAACCCA-TTGGAAGATGGTCTGTCTTCT-TCTA 254
Query 107 TGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTTACTTACCTCCTCTT 166
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 255 TGGAGTAGGGCATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTCCTCCT 314
Query 167 GTTTTTAACCCAAATTGGTCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCA 226
|| || |||||||||||||||||||| || ||||| || ||||| ||||||||||| ||
Sbjct 315 ATTCTTGACCCAAATTGGTCTCTCCCCTAGAGATGCAGCCATTGTTATGCTCTCTGGCCA 374
Query 227 AGTTGCTGATGGTTTTGCTACTATCTTCATTGGTGAATTGATTGATAGATTTGGGCATTT 286
||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 375 AGTTGCTGATGCATTTGCTACTATCTTCACTGGTGAATTGATTGATAGGTTTGGACATTT 434
Query 287 CAAAATTTGGCATGCTGCAGGATC-TCTATTAGTTGCTATCTCATTTTCCTCTGTTTTTG 345
||| |||||||||||||||||||| | || | ||||| ||||| |||||||| |||||||
Sbjct 435 CAAGATTTGGCATGCTGCAGGATCAT-TACTGGTTGCAATCTCGTTTTCCTCCGTTTTTG 493
Query 346 GCGGTTGTTTGCCTTGTTC-ACTCCTCCATAGTAACTCCTCAACTA-TCGAAACATTATC 403
| |||||| |||||||||| | ||||||||| |||| | ||| | | ||||| || ||
Sbjct 494 GAGGTTGTCTGCCTTGTTCGA-TCCTCCATAACGACTCTTTAAC-ACTTGAAACCTTCTC 551
Query 404 GTATTGCATGTTTGCAGCTATCTTCAATGTAGGATGGGCTGCTACTCAGGTTTCTCACAT 463
|| | |||||||||||||| || || | ||||||||||||||||| ||||| || ||
Sbjct 552 CTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCAAGTTTCCCATAT 611
Query 464 GGCTATAGTTAATTGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCG 523
|||||| |||||||| ||| ||||||| |||||||||||||| || |||||||||| ||
Sbjct 612 GGCTATGGTTAATTGTATTTCATTGAACTCAACAAGCAGAGTTGCTTTAACAAGCTCTCG 671
Query 524 TAATGCGTTTAGC-ATGGTTGCTAA-CTTAGGCTTATACGCGATTGCTTTAGTTGTATTT 581
||| ||||||| | ||||||||||| ||| |||||||| |||||||||||||| |||||
Sbjct 672 TAACGCGTTTA-CTATGGTTGCTAATCTT-GGCTTATATGCGATTGCTTTAGTAGTATTC 729
Query 582 GGTGTTAGCGAGGCCG-TGACAAAAGAAAATACCGAAACTCAGTATCGTTGGATTGCTTA 640
||||||| |||| | | |||||||| ||||||||||||||||||| |||||||| ||
Sbjct 730 GGTGTTATTAAGGCTGGTT-CAAAAGAAGATACCGAAACTCAGTATCGCTGGATTGCATA 788
Query 641 TTCATCCATCACCGTTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACC 700
|||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 789 TTCATCTATCACAATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAAGAGCC 848
Query 701 AAGGATGAAGATAAATTT-AAGAGAGACTAGCCGATCAAGAATACCATGG-TCTTATTGG 758
|||| ||| |||| |||| || ||| ||||||||| | |||||||| ||| ||| |||||
Sbjct 849 AAGGCTGAGGATAGATTTGAA-AGAAACTAGCCGAGCGAGAATACCGTGGGTCT-ATTGG 906
Query 759 TTCCGTAAAATTCTATACTATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTG 818
||||| |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 907 TTCCGGAAAATTCTGTACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATTAGTATTG 966
Query 819 AATGTTTCACAGGCATATCTTGCATTCTTTATTATTGATGATTTGCAAATGGCTCAATCT 878
|||||||| |||||||||||||| |||||| |||| |||||||||||||||| ||||||
Sbjct 967 AATGTTTCTCAGGCATATCTTGCGTTCTTTGTTATCGATGATTTGCAAATGGATCAATCC 1026
Query 879 GCTAAAGCTCTGATTCCCGCAATAATCTACATCTGCAGCTTCGTTGTATCGGTTATGCTT 938
||||||||| || |||| ||||| ||||| ||||||||||| |||||||||||| |||||
Sbjct 1027 GCTAAAGCTTTGGTTCCTGCAATTATCTATATCTGCAGCTTTGTTGTATCGGTTCTGCTT 1086
Query 939 CAGGAGATTCCTTGGAATGGAAAACGCCTCAAGGCATATTATTGTGCGGGTGGTATTATT 998
||||||||||| ||||| || |||||| | ||||| |||||| || |||||||| |||
Sbjct 1087 CAGGAGATTCCATGGAACGGGAAACGCTTGAAGGCGTATTATACAGCTGGTGGTATAATT 1146
Query 999 TGGATATTCTGCGGTATATCAATCCT-CTTATTGCCCAGA-AGCATTAACT-CGTACATG 1055
||||||||||| ||| | |||| || || |||||| ||| | ||| || | | | ||||
Sbjct 1147 TGGATATTCTGTGGTGCAGCAATTCTTCT-ATTGCCTAGAGA-CAT-AAGTTCTTTCATG 1203
Query 1056 TATGCGATCTCTGTCTTTATCGGCATCGCAAATGCATTAATGCTGGTGACAGCAATTAGT 1115
|||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| |||
Sbjct 1204 TATGCGATATCTGTCTTTATCGGCATCGCGAATGCATTAATGATGGTAACAGCAATCAGT 1263
Query 1116 ATGCAGAGTGTGTTGATTGGTTCGGAACTCGGTGGATGTGC-TTTCGTTTGTGGGTCATT 1174
||||||||||||||| ||||| | ||| ||||||| || || ||| ||||| || || ||
Sbjct 1264 ATGCAGAGTGTGTTGGTTGGTGCAGAAGTCGGTGGTTGCGCATTT-GTTTGCGGCTCGTT 1322
Query 1175 AAGCTTCTTAGACAAAATGTCATGTGGGCTTGC-CTTATATGTTCTTCAGTCACATCAAG 1233
|||||||||||||| ||||| ||||| ||||| || |||||||||||||||||| |||
Sbjct 1323 GAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCT-ATATGTTCTTCAGTCACACCAAA 1381
Query 1234 GC-ACTTCACCAA-AGGTTGATGTAAACATCAAAGAATAT--T-TTTAC-TTCTCGGTAA 1287
| |||||||| | ||| | |||||| ||| || | | ||||| || || || |
Sbjct 1382 -CTACTTCACCTAGAGGCCAAC-TAAACAACAACCAACAAAGTGTTTACCTT-TCAGTTA 1438
Query 1288 CAAGATATGGGTTAGGACTTGTTCCAGCTGTT-TGCTCGCTTGTTGGAGTTGTTGTAACA 1346
||||||| || ||||| ||||||||||| || |||||| ||||||| || | ||||||
Sbjct 1439 CAAGATACGGTTTAGGTCTTGTTCCAGCA-TTGTGCTCGTTTGTTGGTGTCGCTGTAACG 1497
Query 1347 TAT-TTTATGGAACTCGATAGC 1367
| | |||||||| ||||| |||
Sbjct 1498 T-TCTTTATGGAGCTCGA-AGC 1517
> AT3G04485.1 | Symbols: | other RNA | chr3:1198114-1200104 FORWARD
LENGTH=878
Length=878
Score = 209 bits (113), Expect = 5e-53
Identities = 183/214 (86%), Gaps = 16/214 (7%)
Strand=Plus/Plus
Query 1232 AGGCACTTCACCAAAGGTTGATGTAAACATCAAA-GAATA-TTTTTACTTCTCGGTAACA 1289
|||||||||||| ||||| | || ||||||||| | ||| ||||||||||| ||| |||
Sbjct 486 AGGCACTTCACCGAAGGTCG-TG--AACATCAAACG-ATATTTTTTACTTCTTGGTGACA 541
Query 1290 AGATATGGGTTAGGACTTGTTCCAGCT-------G-T-T-TGCTCGCTTGTTGGAGTTGT 1339
| |||| ||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 542 GGGTATGTGTTAGGACTTGTTCCAGCTCAGACCAGCTCTATGCTCGCTTGTTGGAGTTGT 601
Query 1340 TGTAACATATTTTATGGAACTCGATAGCACAATTCTAAAGCCTCTGTGCCAACCACTACT 1399
|||||||||||||||||| ||| |||||||||||||| ||||| |||| ||||| ||| |
Sbjct 602 TGTAACATATTTTATGGATCTCCATAGCACAATTCTATAGCCTTTGTGTCAACCGCTATT 661
Query 1400 ACTAGAATGAAAAGAAGGAAGATACGCAACGCTT 1433
||||||||||| ||||||||||||||||||||||
Sbjct 662 ACTAGAATGAACAGAAGGAAGATACGCAACGCTT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70632166815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5