BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935359
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44290.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 920 0.0
AT2G44300.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 750 0.0
> AT2G44290.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:18305201-18306251
REVERSE LENGTH=884
Length=884
Score = 920 bits (498), Expect = 0.0
Identities = 604/654 (92%), Gaps = 11/654 (2%)
Strand=Plus/Plus
Query 1 CTTAAATCAGAACAAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATA 59
|||||||||||||||||||||| ||| ||| ||| |||||| |||||||||||||||||
Sbjct 30 CTTAAATCAGAACAAACAAAAT-GGAGTCACGGAAGATTAAAGTAATGGCGACAGCAATA 88
Query 60 GCTTTGATAATGGTGGTGGCTATGGTGGTGGAT---GCCGGAGATGATAAGGGGAAAGAC 116
||||| |||| |||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 89 GCTTTAATAA---TGGTGGCTATGGTGGTGGATGCCGCCGGAGCTGATAAAGGGAAAGAC 145
Query 117 AAGGAAGGGTGTACGGAGCAGCTGGTGGGTATGGCCACATGTCTTCCTTACGTGCAAGGA 176
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 146 AAGGAAGAGTGTACGGCGCAGCTGGTCGGTATGGCCACATGTCTTCCTTACGTGCAAGGA 205
Query 177 CAGGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAGGTTCTCAATTCCAAC 236
||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||
Sbjct 206 AAGGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAAGTTATTAATTCCGAC 265
Query 237 ATGAAGTGTCTTTGTGTGATCATCCAAGACAGGAATGATCCTGATTTAGGTCTCCAGGTC 296
||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 266 ATGAAGTGTCTTTGTATGATCATCCAAGAGAGGAATGATCCTGATTTGGGTCTCCAGGTC 325
Query 297 AACGTCTCTCTCGCTCTCGGTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAG 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 326 AACGTCTCTCTCGCTCTCGCTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAG 385
Query 357 TGTCCTGCTTTGCTTCACTTGGACCCGAAGTCTCCGGAGGCCCACGTGTTCTATCAGCTA 416
|| |||||||||||||| |||||||| || |||||||| ||||| |||||||||||||||
Sbjct 386 TGCCCTGCTTTGCTTCATTTGGACCCAAATTCTCCGGATGCCCAAGTGTTCTATCAGCTA 445
Query 417 GCTAAAGGTCAGAACGAAACGGGCAAAGCCTCTGCTCCCACTGGCTCGG-CTCCTGAGCC 475
|||||||||| ||||||||| | | ||||||||||||||||||||||| || |||||||
Sbjct 446 GCTAAAGGTCTGAACGAAACAGTCTCAGCCTCTGCTCCCACTGGCTCGGCCT-CTGAGCC 504
Query 476 CACCAGCATGTCTTCGACCCCAGGATCCGGTGCTGGTAACAACAGTGGTCGGACGACCTC 535
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 505 CACTAGTATGTCTTCGACCCCAGGATCCAGTGCTGGTAACAACAGTGGTCGGACGACCTC 564
Query 536 TGCGCCAGGCAGGAACCACGCTCAAAGCTTCTCTAAACAATGGCTAGGGCTCGAAGTTGT 595
|| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 565 TGTGCCAGGCACGAACCACGCTCAAAGCTTCTCCAAACAATGGCTAGGGCTCGAAGTTGT 624
Query 596 TGCCCATTTCTTCGTAATTTTTTGTATTTTCATCCTCATTTAGATAA-TAAAAA 648
||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||
Sbjct 625 TGCCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTTTAGATAAGTGAAAA 678
> AT2G44300.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:18307309-18308349
REVERSE LENGTH=837
Length=837
Score = 750 bits (406), Expect = 0.0
Identities = 567/643 (88%), Gaps = 17/643 (3%)
Strand=Plus/Plus
Query 11 AAC-AAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATAGCTTTGATA 68
||| ||||||||| ||| ||| ||| |||||| |||||||||||||||||||| || ||
Sbjct 53 AACAAAACAAAAT-GGAGTCACGGAAGATTAACCTAATGGCGACAGCAATAGC-TT--TA 108
Query 69 ATGGTGGTGGCTATGGTGGTGG-ATGCCGGAGATGATAAGGGGAAAGACAAGGAAGG-GT 126
|| ||||||||||||||||||| | || | ||||||||| ||||||||||| ||| ||
Sbjct 109 ATAGTGGTGGCTATGGTGGTGGCA-GCTGCTGATGATAAGACGAAAGACAAGG-AGGAGT 166
Query 127 GTACGGAGCAGCTGGTGGGTATGGCCACATGTCTTCCTTACGTGCAAGGACAGGCAAAAT 186
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 167 GTACGGAGCAGCTGGTCGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAAGCAAAAT 226
Query 187 CTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAGGTTCTCAATTCCAACATGAAGTGTC 246
||||||||||||||||||||||||| |||||||| ||||| ||||| |||| ||||||||
Sbjct 227 CTCCGACGCCAGACTGTTGCTCCGGTCTCAAACAAGTTCTTAATTCAAACAAGAAGTGTC 286
Query 247 TTTGTGTGATCATCCAAGACAGGAATGATCCTGATTTAGGTCTCCAGGTCAACGTCTCTC 306
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 287 TTTGTGTGATCATTCAAGACAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTC 346
Query 307 TCGCTCTCGGTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAGTGTCCTGCTT 366
| ||||||| |||||||||||||| |||||| |||||||| ||||||| || |||||||
Sbjct 347 TAGCTCTCGCACTTCCTTCTGTTTGTCACGCCGCTGCTGACGTCACTAAATGCCCTGCTT 406
Query 367 TGCTTCACTTGGACCCGAAGTCTCCGGAGGCCCACGTGTTCTATCAGCTAGCTAAAGGTC 426
||||||||||||| ||||| ||||| || ||||| || ||||| |||||||||||||||
Sbjct 407 TGCTTCACTTGGATCCGAATTCTCCAGATGCCCAAGTCTTCTACCAGCTAGCTAAAGGTT 466
Query 427 -AGAACGAAACGGGCAAAGCCTCTGCTCCCACTGGCTCGGCTCCTGAGCCC-ACCAGCAT 484
| ||| |||| ||| |||||||||||||||||||||| | |||| | || | |||||
Sbjct 467 TA-AACAAAACCGGCCCAGCCTCTGCTCCCACTGGCTCGTCCCCTG-GACCTATAAGCAT 524
Query 485 GTCTTCGACCCCAGGATCCGGTGCTGGTAACAACAGTGGTCGGACGACCTCTGCGCCAGG 544
||| |||| ||||||||| || |||||||||||||||||| |||||||||| ||||||
Sbjct 525 TTCTCCGACTTCAGGATCCGATGATGGTAACAACAGTGGTCGAACGACCTCTGTGCCAGG 584
Query 545 CAGGAACCACGCTCAAAGCTTCTCTAAACAATGGCTAGGGCTCGAAGTTGT-TGCCCATT 603
||||||||||||||||||||||| |||||||||||| |||||||||||||| | || |||
Sbjct 585 CAGGAACCACGCTCAAAGCTTCTATAAACAATGGCTGGGGCTCGAAGTTGTGTTCC-ATT 643
Query 604 TCTTCGTAATTTTTTGTATTTTCATCCTCATTTAGATAA-TAA 645
||||||||||||||| ||||||||||||| | ||||||| |||
Sbjct 644 TCTTCGTAATTTTTTATATTTTCATCCTCGTATAGATAAATAA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5