BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935361

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protei...   706    0.0  


> AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr2:18309212-18309826 FORWARD LENGTH=615
Length=615

 Score =  706 bits (382),  Expect = 0.0
 Identities = 442/471 (94%), Gaps = 4/471 (1%)
 Strand=Plus/Plus

Query  2    AAAACTGAAGACTGAAG-AAAATGGGAGTCGTAGTGATCGATGGATCAACGGTACGATCT  60
            ||||| ||| | ||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  54   AAAAC-GAAAAGTGAAGAAAAATGGGAGTAGTACTGATCGATGGATCAACGGTACGATCT  112

Query  61   TTTGTGGACGACGAAGAGCAATTCaaaaaaaGCGTCGACGAGAGGTTCACAGCTCTGGAT  120
            ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  113  TTTGTAGACGACGAAGAGCAATTCAAAAAAAGCGTCGACGAGAGGTTCGCAGCTCTGGAT  172

Query  121  CTGAACAAAGACGGCGTTTTATCGCGATCGGAGTTACGAAAGGCGTTTGAATCGATGAGG  180
            ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct  173  CTGAACAAAGACGGCGTTTTATCGCGATCGGAGCTACGAAAAGCGTTTGAATCGATGAGG  232

Query  181  CTACTTGAATCGCACTTCGGTGTCGATGTGGTGACTCCTCCGGAGGAGCTAACGAAGCTC  240
            ||||||||||||||||| || || |||||||||||||||| ||| ||||| ||||| |||
Sbjct  233  CTACTTGAATCGCACTTTGGCGTTGATGTGGTGACTCCTCAGGACGAGCTGACGAACCTC  292

Query  241  TACGACTCGATCTTCGAGAAATTTGATACGGACCAGAGCGGTTCTGTGGATCTGGAGGAG  300
            ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct  293  TACGATTCGATCTTCGAGAAATTCGATACGGATCAAAGCGGTTCTGTGGATCTGGAGGAG  352

Query  301  TTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTCGGGTCTTGTCCG  360
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  353  TTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTTGGATCTTGTCCG  412

Query  361  ATAACGATGGTGTTAGATGATGATGAGGATAATTTTCT-GAAAAAAGCTGCGGATTTGGA  419
            || ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct  413  ATTACGATGGTGTTAGATGATGATGATGATAATTT-CTTGAAAAAAGCTGCGGATTTGGA  471

Query  420  AGCTTCCAAGTTTGAGAAAGCTTCTTCGTGATGGTGATGGATGGTTTTGGG  470
            |||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  472  AGCTTCCAAGCTTGAGAAAGCTTCTTCGTAATGGTGATGGATGGTTTTGGG  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5