BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935365

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04181.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   154    6e-37
  AT1G60190.1 | Symbols:  | ARM repeat superfamily protein | chr1...   143    1e-33
  AT1G70518.1 | Symbols:  | Unknown gene | chr1:26583570-26584684...  76.8    1e-13


> AT3G04181.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1098839-1099452 
FORWARD LENGTH=391
Length=391

 Score =  154 bits (83),  Expect = 6e-37
 Identities = 110/122 (90%), Gaps = 6/122 (5%)
 Strand=Plus/Plus

Query  1    CTTC-TTCCTCATGTTAGAGTCTAATCAAAAACCTTCTTAGGTGCTCCTCGCTTTCACTG  59
            |||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  80   CTTCGTTCCCCATGTTAGAGTCTAATCAAAATCCTTCTTTGGTGCTCCTCGCTTTCACTG  139

Query  60   CCCCGATCTCTTCCTTCCCCGCCGGTGAAATTT-GGTTCTGAAATAAATCATCCTCGATT  118
            ||||||||||||| ||| ||||||||||||||  |||||||||||    |||||||||||
Sbjct  140  CCCCGATCTCTTCTTTCTCCGCCGGTGAAATTAAGGTTCTGAAAT----CATCCTCGATT  195

Query  119  GG  120
            ||
Sbjct  196  GG  197


> AT1G60190.1 | Symbols:  | ARM repeat superfamily protein | chr1:22198403-22200678 
FORWARD LENGTH=2276
Length=2276

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 98/108 (91%), Gaps = 2/108 (2%)
 Strand=Plus/Plus

Query  205  TAATCACTCTCGTCGACTCACTAATACAACTCGCCGGAGAGATTCTCAGTTTCAAACCAA  264
            ||| ||||||||||||||||||  ||||||||||||| |||||||| || ||||||||||
Sbjct  77   TAACCACTCTCGTCGACTCACTTTTACAACTCGCCGGCGAGATTCTTAGCTTCAAACCAA  136

Query  265  AAGACTTCTTC-ACCAACCAAAGAAGTGTTAAAGAAACTCTCCGACAT  311
            || ||||| || |||||| |||||||||||||||||||||||||||||
Sbjct  137  AACACTTC-TCTACCAACAAAAGAAGTGTTAAAGAAACTCTCCGACAT  183


> AT1G70518.1 | Symbols:  | Unknown gene | chr1:26583570-26584684 
FORWARD LENGTH=649
Length=649

 Score = 76.8 bits (41),  Expect = 1e-13
 Identities = 44/45 (98%), Gaps = 1/45 (2%)
 Strand=Plus/Plus

Query  33   CTTCTTAGGTGCTCCTCGCTTTCACTGCCCC-GATCTCTTCCTTC  76
            ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  74   CTTCTTAGGTGCTCCTCGCTTTCACTGCCCCCGATCTCTTCCTTC  118



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16688892668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5