BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935374
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44410.1 | Symbols: | RING/U-box superfamily protein | chr2... 1831 0.0
> AT2G44410.1 | Symbols: | RING/U-box superfamily protein | chr2:18328417-18330336
FORWARD LENGTH=1774
Length=1774
Score = 1831 bits (991), Expect = 0.0
Identities = 1197/1291 (93%), Gaps = 36/1291 (3%)
Strand=Plus/Plus
Query 1 TTTGGTGTTCTTTGAGCTCTGATGACGAGTGGTGTTCAAGGAGAGACAATGGATCTTGAT 60
|||||||||||||||||||| ||| | | | |||||||||||||||||||||||||||||
Sbjct 290 TTTGGTGTTCTTTGAGCTCTCATGTCAACTAGTGTTCAAGGAGAGACAATGGATCTTGAT 349
Query 61 TTGAATCAAGAGCCATCTTCTGATTCCGAGTCTCCAGGTGGTTTGATGACAGAGCTTTCT 120
|||||||||||||| ||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct 350 TTGAATCAAGAGCCGTCTTCTGATTCGGAGTCTCCGGGTGGTTTGATGACGGCGCTTTCT 409
Query 121 CC-ATGGTTA-AATGAACTTGAATCTGCTCAAGAGCGGATTCAAGAACGCATAAGACAGC 178
|| || |||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CCAAT-GTTAGAA-GAGCTTGAATCTGCTCAAGAGCGGATTCAAGAACGCATAAGACAGC 467
Query 179 TTGAAGCAATAGTTTCAAGAATCAGGGAACGAGAAATAACTACAACTACAACACCGGCTT 238
|||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 468 TTGAAGTGATAGTTTCGAGAATCAGGGAACGAGAAATAACAACAACAACAACACCGGCTT 527
Query 239 TGGTGTCGCTTAACGAACATAGAGATTCAACTGCAGGAGTTATACATGAGCGTTCTCGTG 298
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 528 TGGTGTCGCCTAACGAACATAGAGATTCAACTGCTGGAGTTATACATGAGCGTTCTCGAG 587
Query 299 AGAGA-TTGGTCGAAAACGGCGAAAACAAGACTTATTTGATAGCAAAGGCATTGAACATG 357
||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 588 AGAGACTT-GTCGAAAATGGCGAAAACAAGACTTATTTGATAGCCAAGGCATTGAACATG 646
Query 358 GAGAAAACAAGTTCTGTTCCTGGCGGGTTCTTTGACTGCAACATATGTTTAGAGAAAGCT 417
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 647 GAGAAAACAAGCTCTGTTCCTGGTGGCTTCTTTGACTGCAACATATGTTTAGAGAAAGCT 706
Query 418 GAAGATCCGATTTTGACTTCTTGTGGTCATTTGTTCTGCTGGGGTTGCTTCTATCAGTTG 477
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 707 GAAGATCCGATTTTGACTTGTTGTGGTCATTTGTTCTGTTGGGGTTGCTTCTATCAGTTG 766
Query 478 CCTTTGATTTATTTAAACATAAAGGAATGTCCTGTTTGCGATGGGGAAGTGACTGACACC 537
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 767 CCTTTAATTTACTTAAACATAAAGGAATGTCCGGTTTGCGATGGGGAAGTGACTGACGCC 826
Query 538 GAGGTGATCCCGATATATGGTAATGGAGATGATTGTGATGGTACTAAACCCAAGTTAGAA 597
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 827 GAGGTGATTCCGATATATGGTAATGGAGATGATTGTGATGGTACTAAACCAAAGTTAGAA 886
Query 598 -ACTTGTGGTATTAGTCTACCTCCAAGGCCTAATGCTAAAAGAGTGGAAAGTGTTCGTCA 656
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GA-TTGTGGTATTAGTCTACCTCCAAGGCCTAATGCTAAAAGAGTGGAAAGTGTTCGTCA 945
Query 657 AAAGATCATAAACCG-GGCGATTCCGTTC--CC-TGGGCACGA---CGAAACAATCGAAC 709
||||||||||||||| || || || ||| || ||||||||| |||| |||||||||
Sbjct 946 AAAGATCATAAACCGAGG-GAACCCTTTCTTCCCTGGGCACGAAAACGAAGCAATCGAAC 1004
Query 710 ATATTAGAAGAACTATTGATTCCATAGGACTACAAGCATTAGCTCAAGGCGATGAGTTTG 769
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1005 ATATTAGAAGAACTATTGATTCCATAGGACTACAAGCTTTAGCTCAAGGCGATGAGTTTG 1064
Query 770 GTTTGACAAACATAATAAACAATGG---------TGG-G--CAACAACAACAAcatca-- 815
||||||||||||||||||||||||| ||| | |||||||||||||| ||
Sbjct 1065 GTTTGACAAACATAATAAACAATGGAGGAGACAATGGTGGACAACAACAACAACAACAAC 1124
Query 816 -tcatcatcatcatcatcCGCCTTTTGGACCTTTGAGGTTAATGACACCATATGCTGCTT 874
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 1125 ATCATCATCATCATCATCCGCCTTTTGGACCTTTGAGGTTATTGCCACCATATGCTACTT 1184
Query 875 TCCCAGGTCTTGTAGTTGATACCTCAGACATACC-GC-CT-TTTGATGATGATGCTTTCG 931
||||||||||| |||||||||||||||||||||| || | ||||||||||||||||| |
Sbjct 1185 TCCCAGGTCTTCTAGTTGATACCTCAGACATACCAGCACCCTTTGATGATGATGCTTTTG 1244
Query 932 ATGTTGATAGTTTTGTTGACACAACTAGTTTGAGAAGAAACCGTCGAAGACCTTCACCAG 991
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1245 ATGTTGATAGTTTTGTTGACACAACTAGTTTGAGAAGAAACCGTAGAAGACCTTCACCAG 1304
Query 992 CCGTACGAGCTTCTTATCAGAGAAACCGAACTAACAATGCTTCTCAGACGATTTCGTTCA 1051
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1305 CCGTACGAGCTTCTTATCAGAGAAACCGAAGTAACAATGCTTCTCAAACGATTTCGTTCA 1364
Query 1052 GGCTCGGTTCTTCAGCTTCATCAGCACCTAGAGAGTTTGCTGTTCCGAGCTCCTCCATTA 1111
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1365 GGCTCGGTTCTTCAGCTTCATCAGCACCTAGAGAGTTTGCTGTTCCAAGCTCCTCCATTA 1424
Query 1112 CGACGAGAAGCCAAACTGTAAATCCTACTGAAGTGGTTACTTTGGGTACATCCGCTTCAT 1171
||||||||||||||||||||| ||||||||||||||||||| | |||| || |||||||
Sbjct 1425 TGACGAGAAGCCAAACTGTAAACCCTACTGAAGTGGTTACTTCGAGTACTTCAGCTTCAT 1484
Query 1172 CGTCTAGGAGAAGAACAGAAGATGTAAACAATGGACCTCGGACCAGGTCTAGAAGGAGGC 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CGTCTAGGAGAAGAACAGAAGATGTAAACAATGGACCTCGGACCAGGTCTAGAAGGAGGC 1544
Query 1232 TGAGGTAACT-GTAAAATCG-TCGCCGGAAT 1260
|||||||| | |||| || ||||||||||
Sbjct 1545 TGAGGTAAAAAGGAAAAACGGTCGCCGGAAT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5