BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935376
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44420.1 | Symbols: | protein N-terminal asparagine amidohy... 1652 0.0
> AT2G44420.1 | Symbols: | protein N-terminal asparagine amidohydrolase
family protein | chr2:18330473-18332913 FORWARD LENGTH=1356
Length=1356
Score = 1652 bits (894), Expect = 0.0
Identities = 1017/1077 (94%), Gaps = 5/1077 (0%)
Strand=Plus/Plus
Query 1 TTGAACTCTCTCGCCGGCGATAATGATCTACGTTGGTGGAGTGCCAGTTCGAGATGAGAA 60
||||||| |||||||||||||||||||||||||||||||||||| | ||| ||| ||||
Sbjct 74 TTGAACTATCTCGCCGGCGATAATGATCTACGTTGGTGGAGTGCAATTTCTAGACGAGAG 133
Query 61 TAGCTCATCTTCCTTGTCTTCTTCATCTCAGGGAAGTAGCTTGCTTCTTGATGTAATGAG 120
|||||| | ||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 134 TAGCTCTTTTTCATTGTCTTCTTCATCGCAGGGAAGTAGCTTGCTTGTTGATGTAATGAG 193
Query 121 TCATCCTGTGATAACGTTAGCTTCTGATTCTTTTAAGAATCTTGAGGAAAAGAATGTTTC 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 TCATCCTGTGATAACGTTAGCTTCTGATTCCTTTAAGAATCTTGAGGAAAAGAATGTTTC 253
Query 181 TTTTGATGAAAGTGATTCAGAGAGCTCAACAAAAGACAGATATGTTTACATATTCCAAAG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TTTCGATGAAAGTGATTCAGAGAGCTCAACAAAAGACAGATATGTTTACATATTCCAAAG 313
Query 241 AGAATTTGCTGTTGTGAATCCAGCTCTTGTTGATTTTGTTGGCACCGATGAAGCAACAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AGAATTTGCTGTTGTGAATCCAGCTCTTGTTGATTTTGTTGGCACCGATGAAGCAACAAC 373
Query 301 TTGCGTAGGCCTTGTTATCCGCAACAGAAAATCTGGAATGACGTCTGTTGCGCATATGGA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 374 TTGTGTAGGCCTTGTTATCCGCAACAGAAAATCTGGAATGACGTCTGTTGCACACATGGA 433
Query 361 TTCGCCAGAGATTGTGGATTTGGGGATAAGCCAGATGTTATCATTGGTTTTAGAGGATGA 420
||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 434 TTCGCCAGAGATTGTGGATTTGGGGATAAGCCAGATGTTGTTATTGGTTTTACAGGATGA 493
Query 421 CGTAGATGCCGAGTTAGATGTACATATGGTTGGTGGTTATGAAGATGTAGACATAAAAAA 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 494 CGTAGATGCCGAGTTAGATGTACATATGGTTGGTGGTTATGAAGATGTCGACATAAAAAA 553
Query 481 TGCTGATGGTAGTGGTGGTGACTATGCCAAACCAGAGGGTTACTCATTTCCTTTGTGTTG 540
|||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 554 TGCTGATGGT-GT--TGGTGACTATGCCAAACCAGAGGGTTATTCATTTCCGTTGTGTTG 610
Query 541 CAAATTAGTAGAAACTTTGCAGAAGAGAAGAGAATACTTTCACATTCAAACCCTCTTTAT 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 611 CAAATTAGTAGAAACTTTGCAGAAGAGAAGAGAAAACTTTCACATTCAAACCCTCTTTAT 670
Query 601 TCTTGGGCACAATACCAAGTTGGATGCACAAGCGAACACGTGCCCCATTTTTAATGGATG 660
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 671 TCTTGGGCACAATACCAAGTTGGATTCACAAGCAAACACGTGCCCCATTTTTAATGGATG 730
Query 661 CCTGGTGAATACCTCCACCGGTGCAATTTTCCCAGCCAGTTTCGACAGAACATCTAGATG 720
||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||
Sbjct 731 CCTGGTGAATACCAGCACCGGTGCAATCTTGCCAGCCAGTTTCAACAGAACATCTAGATG 790
Query 721 TCCGGATGAGATTGTTAGAAGAATTCGAGTTTCATCATCATTTTTAGATTCTAGCTGGAA 780
|||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 791 TCCGGATGAGATCGTTAGAAGAATTCGAGTTTCATCATCGTTTGAAGATTCTAGCTGGAA 850
Query 781 GGGAAAGTTACTCGACACATATGACACAAAAACTGATAGATTCATCATTGCACCATGCCG 840
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 851 GGGAAAGTTACTTGACACATATGACACAAAAACTGATAGATTCATCATCGCACCATGCCG 910
Query 841 CTGGACAATGCGCTTGGTTGAATATGTTTGGGAACTTAATCAGCTTTCTGATGAAGAAAT 900
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 911 CTGGACAATGCGCTTGATTGAATATGTTTGGGAACTTAATCAGCTTACTGATGAAGAAAT 970
Query 901 CCTCACAAATTGTTCTACGTCACCTTCTGCTGAAGGTCCAGACTTCGTAGACAATTCAAG 960
|||||| || ||||| || |||||||||||||||||||||||||||||| ||| || |||
Sbjct 971 CCTCACTAACTGTTCCACCTCACCTTCTGCTGAAGGTCCAGACTTCGTAAACAGTTTAAG 1030
Query 961 AAGGATTTGGG-AGTATTTACTCAAACATCCAGATTGGAGCAAAACCTTCCCAAAAAGAC 1019
||||| ||||| | |||||||| ||| ||||||| ||||||||||| ||||||| || |
Sbjct 1031 AAGGAATTGGGGA-TATTTACTGAAATATCCAGAATGGAGCAAAACATTCCCAAGGAGGC 1089
Query 1020 AACCACGCGTGTTTGAAAGGACTGTCGATGGACACTGGAAAAAATGCTGACTTTCTC 1076
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1090 AACCACGTGTGTTTGAAAGAACTGTCGATGGACACTGGAAAAAATGCTGACTTTCTC 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5