BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935382

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30590.1 | Symbols:  | RNA polymerase I specific transcripti...   124    7e-28


> AT1G30590.1 | Symbols:  | RNA polymerase I specific transcription 
initiation factor RRN3 protein | chr1:10835794-10840005 
REVERSE LENGTH=2303
Length=2303

 Score =  124 bits (67),  Expect = 7e-28
 Identities = 96/110 (87%), Gaps = 2/110 (2%)
 Strand=Plus/Plus

Query  174   AGGCAATCTTGTATGTGCTATGCTTCCGAGTGAGATCAATCCTAGATGCT-CCTCGCTTC  232
             ||||||||||||||||||||||||||||| ||||||| ||  | || | | |||||||| 
Sbjct  1556  AGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCATAGTGGA-GATTCCTCGCTTT  1614

Query  233   CAATCGTAGCTTACACCATTGGAGTCAGTTTTATCTCACAAACTAAACCC  282
             |||||| || ||| | ||||||||||| ||||||||||||||||||||||
Sbjct  1615  CAATCGCAGTTTAGATCATTGGAGTCAATTTTATCTCACAAACTAAACCC  1664



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28382293055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5